Phyllobacterium meliloti: LLE53_023290
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Entry
LLE53_023290 CDS
T11258
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmel Phyllobacterium meliloti
Pathway
pmel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LLE53_023290 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmel03400
]
LLE53_023290 (ligD)
Enzymes [BR:
pmel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LLE53_023290 (ligD)
DNA repair and recombination proteins [BR:
pmel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LLE53_023290 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UGX89016
LinkDB
All DBs
Position
pT1293b:241179..243722
Genome browser
AA seq
847 aa
AA seq
DB search
MAVLETYRQKRDFAKTREPKGSKGKKSGNSFVIQKHDATRLHYDLRLEMDGVMKSWAVTR
GPSLVPTEKRLAVHVEDHPIEYNAFEGTIPKGEYGGGTVIIWDRGYWTPVGDAAKGYQKG
HLEFELHGEKLHGLWHLVRMQRKPREKRENWLLIKSEDDAARDAGAPDILEERPESVKTG
RVIDDVAGEEPGWSSKTGKITKKKRNTASAKAPVAKTEDIDLEPSKLKGATKGPLPRFIE
PTLATLSHKPPAGEQWIHEIKFDGYRLQAHIQAGKIKLFTRTGLDWTAKFGKELASAFQA
LPIGNGLVDGELIVETASGASDFSALQEALSANDTSRFRFYAFDLLYLDGYDLTAAPLIE
RKSLLQRVIGSDGGLIRYSDHFEEDGNLVLSHSCRLGLEGIVSKQRDAPYRSGRSKTWIK
SKCSLRQEFVIAAYMPSSTSRKAIGSLVLGVYAKGKLQHVGRVGTGFTASSAEELFHKLS
GLRIQESPFAEKLNAVESRNIRYIRPELVAEVEFRGWTADGSLRHASFRGLREDKVATEV
VRETRKMSATPKQPKRTVQLTHPDRIYWPDAGVTKEGLADYYTEIWRYIEPFIVGRPLAL
LRGPSGIDGQLFFQKHTWKGLNANIDLVKDPQDKAGEPLISINDLDGLMALVQSAVLEIH
PWGSTLKDWERPDMIIMDLDPGPDVGWQAVIDAALETRDRLKQFGLESFVKTSGGKGLHV
VAPLQPKATWPTVKAFTKAIADAMAADDPDHYVATVTKSKRQGKILIDYLRNQRGSTAVA
PYSTRARSGAPVSMPLAWDELDLSIGPAYFTVSNAMTRIDALASDPWQDFRKAAKPLPAT
KSASNKG
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgttggaaacataccgccagaagcgcgattttgcgaagacgcgtgaaccgaag
gggtccaagggaaaaaagtccggaaacagttttgtcatccagaagcacgatgccacccgt
ctgcattacgacttgcggctggagatggacggcgtaatgaaaagctgggctgttacgcgg
ggtccaagtcttgtcccgactgagaagcgtctggccgttcatgtggaagatcacccgatt
gagtacaacgcttttgaggggacaattcccaaaggcgaatatggcggcggaacggtcata
atctgggaccggggatactggacacctgtcggcgatgcggcaaagggatatcaaaaaggc
catcttgagttcgaactgcacggtgaaaagctccacggcctctggcatcttgtgcgtatg
cagcgcaaaccgcgggaaaagcgcgaaaattggctgctcatcaagtccgaagatgatgca
gcgcgcgatgcgggtgcgcctgacatattggaggagcgtccggaatccgtcaaaaccggc
cgggtgatcgatgacgttgccggggaagagccgggttggtcgtcaaaaacgggcaagatc
accaagaaaaagcgaaacactgcatcggcgaaagcgccagttgcaaagactgaagatatt
gatctggagccttcgaagctgaaaggagcgaccaaagggccactgccgcgcttcatagag
ccaaccttggcaacgctgtcacataaaccacctgcgggcgaacagtggatacatgagatc
aaatttgatggttacaggctgcaggcacacatacaggcgggaaagatcaagctttttacc
cgaaccggtctggattggacggcaaagttcggcaaggagctggcttcagcatttcaggcg
ctgccgattggaaatgggcttgtcgatggtgaactcattgtcgaaaccgcatccggcgca
tcggatttttctgccttgcaggaagcgctgagcgcgaatgacaccagccggtttcgtttc
tatgcgttcgatctgctttatcttgatggctatgatctgacagcagcaccgttgattgaa
cgaaaatcgcttttgcagcgggttatcggatcagatggaggcctgatccggtatagcgat
cactttgaagaggacggtaatcttgtcctgtcccattcctgtcgtcttgggctggaaggt
atcgtatccaaacaacgcgatgcgccctatcggtcagggcggagcaaaacgtggatcaaa
tcaaagtgctcattacggcaggaattcgtcattgccgcttacatgccgtcatccacgtcg
cgcaaggcaatcggctcgctggttcttggcgtctatgcaaagggtaagctccaacatgtg
ggacgcgttggaaccggttttaccgcaagttcggcggaagagctgtttcataaactcagt
gggctgcgcattcaggaaagtccatttgctgaaaagctgaatgccgtcgagagcaggaac
atccggtatatccggccagagcttgtggccgaagttgagtttcgcggatggacggctgac
gggagcctgcgccacgcctcatttcgcggattacgggaagacaaggtagcaacggaagtc
gtcagggaaacgcgcaaaatgtctgccacacccaaacaaccgaaacggacggttcaactc
acgcatcccgatcgcatctactggccggatgcaggtgtcacgaaggagggacttgccgat
tactacacagagatatggcgctatatcgaaccctttatcgtaggcaggccactggcattg
ctacgcggtccttccggtattgatggccagctgtttttccagaagcacacatggaaaggc
ttgaacgcgaatatcgatcttgtcaaagacccgcaagacaaggcaggagaaccgctgatc
agcatcaatgatctggatgggctcatggcgctcgttcaatcggctgtgctggaaatccat
ccgtggggctcgacactcaaggattgggaacgtcccgatatgattatcatggatcttgat
ccgggccctgatgtgggatggcaggccgttattgatgctgcgctggaaacccgggacagg
ctgaaacagtttggcttggagtcgttcgtcaagacatcgggcggaaagggactgcatgtg
gtcgcgccgctgcagccgaaggccacatggccaactgtcaaagcattcaccaaagcgatt
gccgacgccatggctgccgacgatccggaccactacgttgcgacggtgacgaagtccaag
cggcagggaaaaatcctgatcgattacctgcgtaatcaaagaggctcgacagccgttgcg
ccttactcgacccgcgcccgctcgggtgcgcctgtatccatgccgcttgcctgggatgaa
ctcgatctgtctatcggtcctgcctacttcactgtcagcaatgcgatgacacgcatagat
gcattggcaagcgatccctggcaggatttccgcaaagcggcgaagccactgccggcaacg
aagtcggcaagcaacaaagggtga
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