Pseudodesulfovibrio methanolicus: V8V93_04565
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Entry
V8V93_04565 CDS
T10565
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pmen Pseudodesulfovibrio methanolicus
Pathway
pmen00300
Lysine biosynthesis
pmen00470
D-Amino acid metabolism
pmen01100
Metabolic pathways
pmen01110
Biosynthesis of secondary metabolites
pmen01120
Microbial metabolism in diverse environments
pmen01230
Biosynthesis of amino acids
Module
pmen_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pmen00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
V8V93_04565 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
V8V93_04565 (dapF)
Enzymes [BR:
pmen01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
V8V93_04565 (dapF)
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Motif
Pfam:
DAP_epimerase
Pro_racemase
Motif
Other DBs
NCBI-ProteinID:
WWX23482
UniProt:
A0ABZ2IXX4
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Position
complement(964757..965608)
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AA seq
283 aa
AA seq
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MNIFTDSVSFFKMQGCGNDFVVIDNRELGVPETAMADWAKAVCARAFGVCADGLFFLENA
DDPALAYRWHFYNSDGSRAEMCGNASRCAAKLSHAIGLAPAEHAFGTDAGPIRAKVLLDG
PDEGRVKVQLTPPLKTETDIALDIDGRPLTVHFTDTGVPHTVVFVDDVTKIDIMDLGPKI
RYHAHFAPAGTNVNFAQVIDENTMLLRTYERGVEAETYACGTGAAATQLLAHTLGLTNDH
ADLTTTGNEVLTVFLENDTVYLQGAAELTFQGELYLKPLGLSL
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgaacatattcaccgactccgtgtccttcttcaagatgcagggctgcggcaacgacttc
gtggtcatcgacaaccgtgaactcggcgtccccgagaccgccatggccgactgggccaag
gccgtgtgcgcccgcgccttcggcgtctgtgccgacggcctgttcttcctcgagaacgcc
gacgacccggcgctggcctaccgctggcacttctacaactccgacggctccagggccgag
atgtgcggcaacgcctcgcgctgcgccgccaagctctcccacgccatcggcctggccccg
gccgaacacgccttcggcaccgacgccgggcccatccgggccaaggtcctcctggacggc
ccggacgaaggccgcgtcaaggtccagctcaccccgccgctcaagaccgagaccgacatc
gccctggatatcgacggccggcccctgaccgtgcacttcaccgacaccggcgtgccccac
accgtggtcttcgtggacgacgtcaccaagatcgacatcatggacctcggccccaagatc
cgctaccacgcccacttcgcgcccgccgggaccaacgtcaacttcgcccaggtcatcgac
gaaaacaccatgctcctgcgcacctatgaacgcggcgtggaagccgagacctatgcctgc
ggcaccggcgccgccgccacccagctcctggcccacaccctcggcctgaccaatgaccac
gccgacctgaccaccaccggcaacgaggtcctgaccgtgttcctcgaaaacgacaccgtc
tacctccagggcgccgccgaactgaccttccagggcgaactctacctcaagcccctgggc
ctgagcctgtag
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