Pseudodesulfovibrio methanolicus: V8V93_05025
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Entry
V8V93_05025 CDS
T10565
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmen Pseudodesulfovibrio methanolicus
Brite
KEGG Orthology (KO) [BR:
pmen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmen03032
]
V8V93_05025 (topA)
03400 DNA repair and recombination proteins [BR:
pmen03400
]
V8V93_05025 (topA)
Enzymes [BR:
pmen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
V8V93_05025 (topA)
DNA replication proteins [BR:
pmen03032
]
Prokaryotic type
DNA Topoisomerases
V8V93_05025 (topA)
DNA repair and recombination proteins [BR:
pmen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
V8V93_05025 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
WWX23572
LinkDB
All DBs
Position
1070515..1072932
Genome browser
AA seq
805 aa
AA seq
DB search
MPKDLIIVESPAKVKTISKFLGKDYMVDASVGHVRDLPTRDLGVDEENNFAPHYEVIQGK
EDVVKRLKAAAKKAGTVYLAPDPDREGEAIAWHVAELLKPVNDNIRRIQFNEITSRAVKD
ALEHAQDLNENLFDSQQARRILDRLVGYKISPILWKNVKRGISAGRVQSVALKILVEREK
ERRAFRPDEYWPFKVLLEGGNPPPFWMDLHKLEGKAVKPGANHVSNADQAESLQQQLENG
EFKVDSVQEKQRKRQPLPPYITSTLQQDANRRMGYSAKRTMSIAQRLYEGVELGKRGTTA
LITYMRTDSVRIAKEAQDAAKELILEMFGADFYPSKTRNFKTKGSAQDAHEAIRPVDVTI
TPESVKSFLPGEQYKLYRLIWQRFVASQMAAATFWDTTVLVNAPQTVWRAKGERLLFAGF
LAAMDKAKSEDDVELPKLHEGDVLQLNELKKEQKFTQPPPRYSEASLVKTLEELGIGRPS
TYAAIISTLIDREYAKLEEKRFVPTELGFTVSDQLSEHFQALMDVGFTAQMEGLLDDVAD
GKKNWEELLKDFGGDFYPTLEKARTEMGRSQQVTDIVCENCGKPMAVKFGKTGEFLGCTG
FPACRTIKNFTRDEHGNIQVVEREKPEDTGVVCEKCGRPMAIKQSRRGEFLGCTGYPDCK
SIVNFTRDENGNIKVVESEKPEVVGTCPDCGGELLLKKARTGSRFIACSNYPDCTYAAPF
STGVPCPREGCTGELVEKSSRRGKIFYSCSEYPKCDYAVWNWPINEPCPKCGHPILVRKT
TKDKGEHIACPKKGCDYTRPVDEKE
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaagatctgatcatcgtcgagtcccccgccaaggtgaagaccatctccaagttc
ctgggaaaggactacatggtcgatgcctcggtgggccacgtgcgcgacctgcccacccgc
gacctgggcgtggacgaggagaacaacttcgccccgcactatgaggtcatccaaggcaaa
gaggacgtggtcaagcgcctcaaggccgcggccaagaaggcgggtaccgtctatctggcg
cccgacccggaccgcgagggagaggccatcgcctggcacgtggccgagctgctcaagccg
gtcaacgacaacatccggcgcatccagttcaacgagatcacctcccgtgcggtcaaggac
gcgctcgagcacgcccaggacctcaacgagaacctgttcgactcccagcaggcccggcgc
atcctggaccggctggtgggctacaagatttccccgatcctgtggaagaacgtcaagcgc
ggcatctcggccgggcgcgtccagtccgtggcgctcaagatcctggtcgagcgcgaaaag
gaacgccgcgccttccggcccgacgagtactggccgttcaaggtgctcctggagggcggg
aacccgccgccgttctggatggacctgcacaagctcgaaggcaaggcggtcaagccgggg
gccaaccacgtttccaacgcggaccaggccgaatccctgcaacagcagctcgaaaacggc
gaattcaaggtcgactcggtgcaggaaaagcagcgcaagcgccagcccctgccgccgtac
atcacctccaccctgcagcaggacgccaaccggcgcatgggctactcggccaagcggacc
atgtccatcgcccagcggctgtacgagggcgtggagctgggcaagcgcggcaccaccgcg
ttgatcacctacatgcgtaccgactcggtgcgcatcgccaaagaggcgcaggacgcggcc
aaggagctgatcctggagatgttcggcgcggatttttatccgtccaagacccggaatttc
aagaccaaaggcagcgcacaggacgcgcacgaagccatccggcccgtcgatgtgaccatt
acacccgagagtgtgaagagctttttgcccggtgagcagtacaagctctaccggctcatc
tggcagcggttcgtggcctcgcagatggccgcggccaccttctgggacactaccgtgctg
gtcaacgccccgcaaaccgtgtggcgcgccaagggcgagcggctgctcttcgccggtttc
ctggcggccatggacaaggccaagtccgaggacgacgtggagctgcccaagctgcacgag
ggcgacgtgctccagctcaacgagctgaagaaggaacagaagttcacccagccgccgccg
cgctattcggaggcctcgctggtcaagaccctggaggaactgggcataggcaggccgtcc
acctacgcggccatcatctccaccctgatcgaccgcgagtacgccaagctggaggagaag
cggttcgtgcccaccgaactcgggttcaccgtgtccgaccagctgtccgagcacttccag
gccctcatggacgtgggcttcaccgcccagatggaaggattgctcgacgacgtggccgac
ggcaagaagaactgggaggagctgctcaaggacttcggcggcgacttctaccccaccctg
gaaaaggcgcgcaccgagatgggccgctcccagcaggtcacggatatcgtgtgcgagaac
tgcggcaagcccatggccgtcaaattcggcaagaccggcgagttcctgggctgcaccgga
ttcccggcctgccggaccatcaagaacttcacccgcgacgagcacggcaacatccaggtg
gtggaacgcgaaaaacccgaggacaccggggtggtctgcgagaagtgcggccgccccatg
gccatcaagcagtcccggcgcggcgagttcctgggctgcaccggctacccggactgcaag
tccatcgtcaatttcacccgcgacgagaacggcaacatcaaggtcgtggagtcggagaaa
cccgaagtggtcggcacctgcccggactgcggcggcgaactgctgctcaagaaggcccgc
accggttcccggttcatcgcctgttccaactatccggactgcacctatgccgcgccgttc
tccacgggcgtgccctgcccgcgcgagggctgcaccggtgagctggtcgagaaatcctcg
cgccggggcaagatcttctactcctgctccgagtatcccaagtgcgactacgcggtctgg
aactggcccatcaacgagccgtgccccaagtgcggccaccccatcctggtgcgcaagacc
accaaggacaagggcgagcacatcgcctgtcccaaaaaaggatgcgactatactcgtccg
gtggacgagaaggagtag
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