Pseudodesulfovibrio methanolicus: V8V93_05185
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Entry
V8V93_05185 CDS
T10565
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pmen Pseudodesulfovibrio methanolicus
Pathway
pmen03030
DNA replication
pmen03430
Mismatch repair
pmen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V8V93_05185 (dnaE)
03430 Mismatch repair
V8V93_05185 (dnaE)
03440 Homologous recombination
V8V93_05185 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmen03032
]
V8V93_05185 (dnaE)
03400 DNA repair and recombination proteins [BR:
pmen03400
]
V8V93_05185 (dnaE)
Enzymes [BR:
pmen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V8V93_05185 (dnaE)
DNA replication proteins [BR:
pmen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V8V93_05185 (dnaE)
DNA repair and recombination proteins [BR:
pmen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V8V93_05185 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
DUF6282
DUF4447
Motif
Other DBs
NCBI-ProteinID:
WWX23602
LinkDB
All DBs
Position
complement(1107618..1111172)
Genome browser
AA seq
1184 aa
AA seq
DB search
MAEFVHLHVHTEYSLLDGAIRIGDLLSRAKDLGMPAVAITDHGSMYGAVVFYMEAEKLGI
KPIIGCEVYVAPGDVDEVDAHHKKDHGGGYHLVLLAKNQRGYKNLIKIVSEGYLNGFYYK
PRVCKNLLKKYSEGLVALSACLAGEVPRKLMNEGLQAGADMARIYESIFPGNFYLELQDN
GIGKQTRLNELLIQCAEETGLPLVATNDCHYLTAEDYEAHDTLLCIQTQTTVDAEKRFRM
ETKELYFKTPEEMEKAFAHVPEAIANTQRIAEQCNLEIELGNYYFPEYELPEGVSMNEEF
DRLCREGLKRRLNTITYEVDEKKYWDRLDYELGVIKEMGFPAYFLIVQDFINWAKDHRIP
VGPGRGSAAGSIVAWSLKITNLDPLPYDLLFERFLNVERVSMPDIDVDFCERRRLEVVKY
CAEKYGVDRVAQITTFGTMKTKAVIKDVGRALGMTFGETDKIAKLIPDDPALMAKLLGVE
KAKITVPNAVKAVTELDDMVATDPKVAKLIDISTRLEGLCRHASTHAAGVVISNKPMTEY
LPLYKGKKGEIVTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQGKKAPDLETLH
LDDPDTFAIFAKGDTDGIFQVESSGMRKYLRMLRPDRFEDIVAMLALYRPGPLGMIGSHG
VSMVDEFIMRKHGEIEVTYPHPSLEETLKPTYGVMVYQEQVMATAMVIANYSLGEGDLLR
RAMGKKIAEEMAKQRSRFLEGARENEIDDAVANDIFDTMEKFAAYGFNKSHSAAYALISY
HTAYLKAHFPVEFMAALMSTEMNNTDKIIMYVNACRDMDIKVRQPDINEGQARFSVKDGD
ILFAMAAIKNVGEEAINEIAAERAENGPYENIFDFCERVNLRRVTKRVLESLIKAGALDC
FSCSRAALLEDLDKAVALGQKKAKERESGMLNMLDMLGGGEKKDSAHTPTCSLCEEFDDR
EKLTLEKEVLGFFLSGHPLLAYRHDMQRLRTVTLEECKTIPNGTEVRVAVIIPDYKQFIT
RKGAPMAFCNAEDLTTYGEITMLPNVYAEARELLDADRPLLVQGKIDQRDDQPGPEDAPK
SAKILADKVLFLADAAQGSDQPVSLWIGEKNAVDPHLNALKAILQRYPGTTGVNLGIITR
EAVVNLRLGNGWKVYPGRDFWKEVEAWQNGDAKTYRAEAEAELL
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaattcgttcatcttcacgtccataccgaatacagcctgctcgacggcgccatc
cgcatcggggacctgctatccagggccaaagacctgggcatgcccgccgtggccatcacc
gaccacggatccatgtacggggccgtggtcttctacatggaggccgagaaactgggcatc
aagccgatcatcggctgcgaggtgtacgtggctccgggcgacgtggacgaggtcgacgcg
caccacaagaaggaccacggcggcggctaccacctggtcttgctggccaagaaccagcgc
ggctacaagaacctgatcaagatcgtctccgaagggtacctgaacggcttctactataag
ccgcgcgtgtgcaagaacctcctgaaaaagtactccgaaggcctggtggctctgtccgcc
tgcctggcgggcgaggtgccgcgcaagctcatgaacgaggggcttcaggcgggcgcggac
atggcccggatctacgagtccatcttccccggcaatttttacctggagctccaggacaac
ggcatcggcaagcagacccggctcaacgagctgctcatccagtgcgcggaggagaccggc
ctgcccctggtggccaccaacgactgccactacctgaccgccgaggactacgaggcccac
gacaccctgctgtgcatccagacccagaccacggtggatgcggagaagcgcttccgcatg
gagacgaaggagctctatttcaagaccccggaggagatggagaaggcgttcgcccacgtg
cccgaggccatcgccaacacccagcgcatcgccgagcagtgcaacctcgagatcgagctc
ggcaactactatttcccggagtacgagctgcccgaaggcgtgtccatgaacgaagagttc
gaccgcctgtgccgggagggcctcaagcgccgcctgaacaccatcacctatgaggtggac
gagaaaaagtactgggatcggctggactacgagctcggggtcatcaaggagatgggcttc
ccggcctacttcctcatcgtccaggacttcatcaactgggccaaggaccaccgcatcccg
gtggggcccggccgaggctcggccgccggttccatcgtggcctggtcgctcaagatcacc
aacctcgatccgctcccctacgatctgctgttcgagcgcttcctgaacgtggaacgcgtg
tccatgcccgatatcgacgtggacttctgcgagcgccgccgcctggaggtggtcaagtac
tgcgccgagaagtacggcgtagaccgggtggcccagatcaccaccttcgggaccatgaag
accaaggcggtcatcaaggacgtgggccgggcgctgggcatgaccttcggcgagaccgac
aagatcgccaagctcatcccggacgacccggcgctcatggccaagctgctcggcgtggaa
aaggccaagatcaccgtgcccaacgcggtcaaggccgtgaccgagctggacgacatggtc
gccaccgaccccaaggtggccaagctcatcgatatctcgacgcgcctcgaagggctgtgc
cgccacgcctccacccacgcggcgggcgtggtcatctcgaacaagcccatgaccgaatac
cttcctctctacaaagggaagaagggtgaaatcgtgacccagttcgacatgaagaaggtc
gagaaggtcggcctgatcaagttcgacttcctggggctgcggaccatgacggtcatcgag
gactgcctggacatcatccgcgagcagggcaagaaggccccggacctggaaaccctgcac
ctggacgacccggataccttcgccatcttcgccaagggcgacacggacggcatcttccag
gtggagtcgtcgggcatgcgcaagtacctgcgcatgctccgcccggaccgcttcgaggac
atcgtggccatgctcgccctgtaccggccgggcccgctcggcatgatcggctcccacggc
gtgtccatggtcgacgaattcatcatgcgcaagcacggcgagatcgaggtcacctacccg
cacccgtccctggaggagaccctgaaaccgacctacggggtcatggtctaccaggagcag
gtcatggccacggccatggtcatcgccaactactcgctcggcgaaggcgacctgctgcgc
cgggccatgggcaagaagatcgccgaggagatggccaagcagcggtcccgctttctggag
ggcgcgcgcgagaacgagatcgacgacgccgtggccaacgacatcttcgacaccatggag
aagttcgcggcctacggcttcaacaagtcccactccgcggcctacgcgctgatctcctac
cacaccgcctatctcaaggcccatttcccggtggaattcatggccgcgctgatgagcacg
gaaatgaacaacaccgacaagatcatcatgtacgtcaatgcctgccgcgacatggacatc
aaggtccgccagccggacatcaacgaagggcaggcgcgcttctcggtcaaggacggggat
atcctgttcgccatggcggccatcaagaacgtgggcgaggaggcgatcaacgaaatcgcg
gccgagcgcgcggagaacggtccgtacgagaacatcttcgacttctgcgagcgggtgaac
ctgcgccgtgtgaccaagcgggtcctggaatcgctgatcaaggcaggcgcgttggactgc
ttctcctgctcccgcgcggccctgctcgaagacctggacaaggccgtggcgctgggccag
aaaaaggccaaggagcgggagtccggcatgctcaacatgctggacatgctcggcggcggc
gagaagaaggactcggcccacacgccgacctgctccctgtgcgaggagttcgacgaccgc
gagaagctgaccctggaaaaggaggtcctcggcttcttcctgtccgggcacccgctgctg
gcctaccgccacgacatgcagcggctgcgcaccgtgacgctggaggagtgcaagaccatc
cccaacggcaccgaggtccgggtggccgtgatcatcccggactacaagcagttcatcacc
cgcaagggcgcccccatggccttctgcaacgccgaggacctgaccacctacggcgagatc
accatgctgcccaacgtctatgccgaggcgcgcgaactgctcgacgcggaccgccccctg
ctggttcagggcaagatcgaccagcgcgacgaccagcccggccccgaggacgcgcccaaa
tccgccaagatcctggccgacaaggtcctgttcctggccgacgcggcccagggctcggat
cagccggtctccctgtggatcggcgaaaagaacgcggtcgatccgcacctcaacgcgctc
aaggcgatcctccagcgctaccccggcacgaccggcgtgaacctcggcatcatcacccgc
gaggccgtggtcaacctgcgcctgggcaacggctggaaggtctaccccggccgtgatttc
tggaaggaggtcgaggcctggcagaacggcgacgccaagacctaccgcgccgaagccgag
gccgaactcctgtag
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integrated database retrieval system
