Pseudodesulfovibrio methanolicus: V8V93_07900
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Entry
V8V93_07900 CDS
T10565
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmen Pseudodesulfovibrio methanolicus
Pathway
pmen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V8V93_07900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmen03019
]
V8V93_07900
03009 Ribosome biogenesis [BR:
pmen03009
]
V8V93_07900
Enzymes [BR:
pmen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V8V93_07900
Messenger RNA biogenesis [BR:
pmen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V8V93_07900
Ribosome biogenesis [BR:
pmen03009
]
Prokaryotic type
rRNA helicases
V8V93_07900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WWX24122
UniProt:
A0ABZ2J3I0
LinkDB
All DBs
Position
complement(1695534..1697186)
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AA seq
550 aa
AA seq
DB search
MTSFKELGLSGSTLDALESKGFTAPTPIQALTIPKLLSGSRDIVGQAQTGTGKTAAFGLP
VIEAAEEGAHRVQSLILAPTRELAIQVAEEIDSLKGGKRIRVLPVYGGQAIHMQLKALKR
GVDVVVGTPGRIMDHLERGSLKIDALNYFILDEADEMCNMGFVDDVRAILASANEDRRTL
MFSATMAREVMAIAKEFMGDFDVVTVKPETSDAPLTRQVFHEMADSDRFEALCRVIDARP
DFYGLVFVRTRADADQVAARLTQRGYPAEPIHGDLNQAQREKILNGFRKRKATILVATDV
AARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAITLITPSEFRKLMYISKSS
GIEIAKEPLPRIEDVIHSKKRKVVAELNDILEAEGHSAYLAMAGELLRDRPAEQVVAALL
RNTFGEELMESGYRRIDAVGPGGRGRADLVCALGRAHGMNPKRFVDFIATAARIKPWAIQ
HVRVQGERTTFTVPAAEADKVVNAVNSREGAPVVARDESRRKPPGRFPKKNGRPGGKPPY
KQRYKPKQGR
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgaccagtttcaaggaactggggctttcgggatcaaccctggacgccctggaatccaag
gggttcaccgcccccacccccatccaggccctgaccatcccgaagctgctctcgggcagt
cgggacatcgtgggccaggcccagaccggcacgggcaagaccgcggccttcggcctgccc
gtcatcgaggcggccgaggagggcgcgcaccgcgtccagtcgctcattctggcccccacc
cgcgagttggccatccaggtggccgaggagatcgactccctcaagggcggcaagcgcatc
cgcgtgctccccgtgtacggtggccaggccatccacatgcagctcaaggcgctcaaacgc
ggcgtggacgtggtcgtgggcacgcccggccggatcatggaccacctggagcgcggctcc
ttgaagatcgatgcgttgaactacttcattctcgacgaggctgacgagatgtgcaacatg
ggtttcgtggacgacgtgcgcgccatcctggcctcggccaacgaggaccggcgcaccctc
atgttctccgcgaccatggcccgcgaagtcatggccatcgccaaggagttcatgggcgac
ttcgacgtggtcacggtcaaacccgagacctcggacgcgcccctgacccgccaggtcttc
cacgagatggccgactctgaccgcttcgaggccctgtgccgggtcatcgatgcccggccg
gacttctatggcctggtcttcgtgcgcaccagagccgacgccgaccaggtggccgcccgg
ctgacccagcgaggctatccggccgagcccatccacggcgacctgaaccaggcccagcgc
gaaaaaatcctgaacggcttccgcaaacgcaaggcgaccatcctggtggctacggacgtg
gccgcgcgcggcatcgacgtgcctgacctgacccacgtggtcaacttcgccctgccccag
gacccgcagaccttcgtgcaccgaaccgggcgcacgggccgggcgggcaaggaaggcgtg
gccatcaccctgatcacgccgagcgagttccgcaagctcatgtacatctccaagagctcc
ggcatcgagattgccaaggagcccctgccgcgcatcgaggacgtcatccactccaagaag
cgcaaggtggtggccgagctcaacgacatcctggaagccgaagggcacagcgcctatctg
gccatggccggagaactgctccgcgaccgccccgccgaacaggtggtcgccgccctgctt
cgaaacaccttcggcgaggaactgatggagtccggctaccgccgcatcgacgccgtgggg
cccggcgggcggggccgcgccgacctggtctgcgcactgggccgcgcccacggcatgaac
cccaaacggttcgtggacttcatcgccaccgccgcgcgcatcaagccgtgggccattcag
cacgtccgggtccagggcgagcggaccaccttcacggtcccggccgccgaggcggacaag
gtcgtgaacgcggtcaacagccgggaaggcgcccccgtcgtcgccagggacgaatcgcgg
cgcaagccgccgggccggttccccaagaagaacggaagaccgggaggcaagccgccctac
aagcagcgctacaagcccaaacagggacgctag
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