Pseudodesulfovibrio methanolicus: V8V93_09025
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Entry
V8V93_09025 CDS
T10565
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmen Pseudodesulfovibrio methanolicus
Pathway
pmen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V8V93_09025 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmen03021
]
V8V93_09025 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmen03400
]
V8V93_09025 (rpoC)
Enzymes [BR:
pmen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V8V93_09025 (rpoC)
Transcription machinery [BR:
pmen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V8V93_09025 (rpoC)
DNA repair and recombination proteins [BR:
pmen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V8V93_09025 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WWX24335
UniProt:
A0ABZ2J081
LinkDB
All DBs
Position
1920612..1924766
Genome browser
AA seq
1384 aa
AA seq
DB search
MTLDDLFTLRGAPNAAAQGRNLKAIQISIAAPETIREWSYGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDITMADLEKVLYFDSFIVLDPGETPLKKHQVVSEDQYFQVIDHFGED
ALTVGMGAETVRTMLQALDLPTLRTELREESQTTRSQTKKKKITKRLKIVEAFLESGNKP
EWMIMEVIPIIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPEIIIRN
EKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKLHQCGLPKKMALELFKPFIYSELEKREIATTIKSAKKMVEREDLVVWDILED
VVREYPIMLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSV
EAQIECRVLMMSSNNILSPSNGSPIINPSQDIVLGLYYLTTPRSFEKGEGMIFSSPEEVI
SAYDFGAVGIHARIKVRMNGEIIETTTGRIIVSELLPEKVPFELVNCVLNKKNIAALVSG
AYRLAGTKATVILCDRIKDLGYEYATRAGVTIGVKDLKIPANKPKMLATANAEVDEIENQ
FQDGIITRTEKYNKIVDVWTKVTNDISNEMMQEMSTDVLTDPKTGNTEVNSSFNPIYMMA
TSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITASFREGLSVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVVQDVTVSELDCGTVDGLELTHYIKGGEIKQRLAERVLGRVTMF
DTYDEETGELVIPANTMIDAQYAKKLDASGVNSIVIRSGLTCKSKQGVCAMCYGRDLARG
HLVNVGETVGIIAAQSIGEPGTQLTMRTFHIGGTASKEIESSSIESQHNGRVITSRMRTV
ANSDGDKMVLGKSCQVGIVDEQGREREKYVLPSGARLLVDEGQEVKKGTPLAEWDPYMEP
FIVDVSGTIKFKDIIEGKTVQEDRASKASFTIMEYRTTNYRPAVTLLGDDGKAVYRPGTE
IDANFAMPVGAILMVKDGDKVRAGDVIARKPRESSKTKDIVGGLPRVAELFEVRKPKDLG
VVSSIDGIVTFGPETKGKRKVVVTPETGDAQEFLIPKGKHITVQESDFVEAGDLLTEGSP
ELHDILRIKGEKHLARYLVEEIQDVYRFQGVNINDKHIEIIVRQMLKKVSILNPGSTTFL
IGEQVDKLRFMEENARVSAEGGKPAVAETLVLGITQASLSTDSFISAASFQETTKVLTEA
SLKGKTDYLHGLKENVIVGRLVPAGTGFRKYTDSEISVPDQPERPDKFLEELEESPLLVD
VPSV
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgacgttggacgatctgttcaccttacgtggagcgccgaacgcggctgcacaaggccgt
aacctgaaggctatccagatatccatagctgcgcccgaaaccatccgggagtggtcctac
ggtgaagtcaaaaaaccggagaccatcaactaccggaccttcaaaccggagcgggacggc
ctgttctgcgccaagatcttcggcccggtgaaggactacgagtgcaactgcggcaaatac
aagcgcatgaagcatcgcggcatcgtctgcgagaagtgcggcgtcgaggtcatcgcctcc
aaggtccgccgcgagcgcatgggtcacatcgaactggccgcgcccgtggcgcacatctgg
ttcctgaagaccctgccgtccaagatcggcacgctgctcgacatcaccatggccgacctg
gagaaggtcctgtacttcgactccttcatcgtgctcgatccgggcgagaccccgctcaag
aagcaccaggtcgtcagcgaggaccagtacttccaggtcatcgaccacttcggcgaggac
gccctgaccgtgggcatgggcgcggagaccgtccggaccatgctccaggcgctcgatctg
ccgaccctgcgcaccgagctgcgcgaggaatcgcagaccacccggtcccagaccaagaag
aagaaaatcaccaagcggctgaagatcgtcgaggccttcctcgagtccggcaacaagccc
gagtggatgatcatggaagtgattcccatcatcccgcccgagctgcgcccgctggtcccc
ctggacggcggccgtttcgccacctcggacctcaatgacctgtaccgccgcgtcatcaac
cgcaacaaccgcttgaagaggctgcttgagctcggcgcgcccgagatcatcatccgcaac
gagaagcgcatgttgcaggaagccgtggacgccctgttcgacaacggccgccgcggccgg
gccatcaccggcaccaacggccgaccgctcaagtccctgtccgacatgatcaagggcaag
cagggccggttccgccagaacctgctcggcaagcgcgtcgactactccggccgttcggtc
atcgtggtcggcccgaagctgaagctgcaccagtgcggcctgcccaagaagatggcgctg
gaactgttcaagccgttcatctactcggagcttgagaagcgcgagatcgccacgaccatc
aagtcggccaagaagatggtcgagcgcgaagacctggtcgtctgggatatcctggaggac
gtggtccgcgagtacccgatcatgctcaaccgcgccccgaccctgcaccgcctgggaatc
caggccttcgagccgctgctcgtcgaaggcaaggccatccaactgcacccgctcgtctgc
tccgcctacaacgcggacttcgacggcgaccagatggccgtgcacgtgccgctctccgtg
gaggcgcagatcgagtgccgcgtgctgatgatgtcctccaacaacatcctcagcccgtcc
aacggctcgccgatcatcaacccgtcccaggacatcgtcctcggattgtactacctgacc
acgccgcgttccttcgagaagggcgagggcatgatcttctcgagccccgaggaggtcatc
tccgcgtacgacttcggcgcggtcggcatccatgcccgcatcaaggtacgcatgaacggc
gagatcatcgagaccaccaccggccgcatcatcgtttccgagctgctgcccgaaaaggtc
ccgttcgagctggtcaactgcgtgctgaacaagaagaacatcgccgccctggtctccggc
gcctaccgtctggcgggcaccaaggccacggtcatcctgtgcgaccgcatcaaggatctc
ggatacgagtacgccactcgggccggtgtgaccatcggcgtcaaggacctcaagattccg
gccaacaagcccaagatgctggcgaccgccaacgccgaggtcgacgagatcgagaaccag
ttccaggacggcatcatcacccgtaccgagaaatacaacaagatcgtcgacgtctggacc
aaggtgaccaacgacatctccaacgaaatgatgcaggagatgtccaccgacgtgctgacc
gatcccaagaccggcaacaccgaggtcaactcgagcttcaaccccatctacatgatggcc
acgtccggcgctcgaggcaaccaggaccagatgcggcagttggccggcatgcgcggcctg
atggccaagccctcgggcgagatcatcgagaccccgatcaccgcgagcttccgcgaaggg
ttgtccgtcctgcagtacttcatctccacccacggcgcccggaagggcctggccgatacc
gcgctcaagaccgcgaactccggctacctgacccgccgtctggtcgacgtcgtccaggat
gtgaccgtgtccgagctggactgcggcaccgtggacggcctggagctgacccactacatc
aagggcggcgagatcaagcagcggctggccgagcgagtgctgggccgcgtgaccatgttc
gacacctacgacgaggagaccggcgagctggtcatccccgccaacaccatgatcgatgcc
cagtacgccaagaagctcgacgcttccggcgtgaactccatcgtcatccgctcgggcctg
acctgcaaatccaagcagggcgtctgcgccatgtgttacggacgcgacctggcccgcggg
cacctggtcaacgtgggtgagaccgtcggcatcatcgccgcgcagtccatcggcgagccc
ggcacccagctgaccatgcgtaccttccacatcggcggtaccgcatccaaggagatcgag
tcctcgagcatcgagtcccagcacaacggccgcgtgatcacctcgcgcatgcgcaccgtc
gccaactccgacggcgacaagatggtgctcggcaagagctgccaggtcggcatcgtggac
gagcagggccgcgagcgtgagaaatacgtgctcccgtccggtgcccgtctgctggtggac
gaaggccaggaggtcaagaagggcacgccgctggccgaatgggatccgtacatggagccg
ttcatcgtcgacgtgtccggtaccatcaagttcaaggatatcatcgaagggaagaccgtc
caggaggaccgtgcctccaaggcgtccttcaccatcatggaataccgcacgaccaactac
cgtccggccgtcaccctgctgggcgacgacggcaaggccgtgtaccgtcccggcaccgag
atcgacgccaacttcgccatgcccgtgggagccattctcatggtcaaggacggcgacaag
gtccgcgccggcgacgtcatcgcgcgcaagccgcgtgaatcctccaagaccaaggacatc
gtcggcggtctgccgcgcgttgccgagctcttcgaggtgcgcaagcccaaggacctgggc
gtggtttcgtccatcgacggcatcgtcaccttcggtcccgagaccaagggcaagcgcaag
gtcgtggtcactcccgagaccggcgacgcccaggaattcctcattcccaagggcaagcac
atcacggtccaggagtccgacttcgtcgaggccggcgacctgctgaccgaaggctccccg
gagctgcacgacatcctgcggatcaagggcgagaagcacctggcccgctacctggtcgaa
gagatccaggacgtgtaccgcttccagggcgtcaacatcaacgataagcacatcgagatc
atcgtgcgccagatgctcaagaaggtctcgatcctgaaccccggctccaccaccttcctc
atcggcgagcaggtggacaagctgcggttcatggaggagaatgcccgggtctcggccgag
ggcggcaagcccgcggttgccgagactctggtcctgggcatcacccaggcctccctgtcc
acggactccttcatctcggccgcctcgttccaggagaccaccaaggtcctgaccgaggcc
tccctgaagggcaagaccgactatttgcacggtctgaaggaaaacgtcatcgtcggtcgg
ttggtgcccgccggaaccggattccgcaagtacacggactccgagatcagcgtgcccgac
cagccggaacgccccgacaagttcctcgaggagttggaggaaagcccgctcctggtggat
gtgccgtcggtgtaa
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integrated database retrieval system
