KEGG   Pseudodesulfovibrio methanolicus: V8V93_09180
Entry
V8V93_09180       CDS       T10565                                 
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
pmen  Pseudodesulfovibrio methanolicus
Pathway
pmen03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pmen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    V8V93_09180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmen03021]
    V8V93_09180
   03400 DNA repair and recombination proteins [BR:pmen03400]
    V8V93_09180
Enzymes [BR:pmen01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     V8V93_09180
Transcription machinery [BR:pmen03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     V8V93_09180
DNA repair and recombination proteins [BR:pmen03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      V8V93_09180
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L RAD51D_N
Other DBs
NCBI-ProteinID: WWX24366
LinkDB
Position
1940795..1941835
AA seq 346 aa
MLIENGDKLINTRNWSELVKPESLVRDPKSSRMYGKFICEPLERGYATTIGNAMRRVLLS
SMQGCAIVSATIEGVQHEFTTLPGVLEDMTEVVLNLKQVRIAMTTDEPQRLVLEANKKGQ
VTAGMIQENQNVTILNKDQLIATLTENRSLKMELEVRMGKGYVPADMHEGLTDEIGSMVL
DASYSPVKKVAYSVEQARVGQMTNYDKLILEVWTDGSVTPEDACAYSAKILKDQLSVFIN
FDESSSETHEEEDDSIDLNPNLFKSIDELELSVRATNCLKAANIQLVGELVQRTEQTMLK
TKNFGRKSLDEIRRVLDGMSLKFGMTVEDFDKKYQEWLKRKEKNEA
NT seq 1041 nt   +upstreamnt  +downstreamnt
atgcttattgagaacggcgacaaactcatcaacacccgcaattggagcgaactggtcaag
cccgagtccctcgtgcgcgatcccaagtcctccaggatgtatggtaaattcatctgcgaa
cccttagaacgcggctatgccaccaccatcggcaacgccatgcgtcgggttctgctctcc
tccatgcagggctgcgccatcgtcagcgcgaccatcgagggagtgcagcatgagttcacc
acgctgcccggggttcttgaggacatgaccgaggttgtgctgaacctgaagcaggttcgc
attgccatgaccacggacgagcctcagcgcttggtcctcgaagccaacaagaaggggcag
gtcactgccggcatgatccaggaaaaccagaatgtcaccattctgaacaaggatcagctt
atcgccacgctgaccgaaaaccgctccctgaagatggaattggaagtccgcatgggcaag
ggctacgtcccggccgacatgcacgaagggctgaccgatgaaatcggctccatggtcctc
gacgccagctactcccccgtcaagaaggtcgcatactccgtcgaacaggcgcgtgtcggc
cagatgacgaactatgacaaactcatcctggaagtgtggaccgacggttccgtcactccc
gaggatgcctgtgcatacagcgccaagatcctcaaggaccagctttcggtgttcatcaac
ttcgacgaatcctcctccgagacgcatgaggaagaggacgattccatcgatctgaacccg
aacctcttcaagtccattgacgagctcgaactctcggttcgcgccaccaactgcttgaag
gccgccaacatccagttggtgggcgaattggttcagcgcaccgaacagaccatgctcaag
accaagaacttcggccgcaagtccctggacgagatccgccgggttctcgacggcatgtcc
ttgaagttcggcatgactgtcgaggattttgacaagaaataccaggaatggttgaagagg
aaagagaaaaatgaggcatag

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