Pseudodesulfovibrio methanolicus: V8V93_09490
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Entry
V8V93_09490 CDS
T10565
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pmen Pseudodesulfovibrio methanolicus
Pathway
pmen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V8V93_09490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmen03019
]
V8V93_09490
Messenger RNA biogenesis [BR:
pmen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V8V93_09490
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WWX24507
UniProt:
A0ABZ2J0N4
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All DBs
Position
2006225..2007826
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AA seq
533 aa
AA seq
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MNCMLYRTDKSLVMVDCGLMFPEDYHFGVDVVIPCFDFVLRNKKMLNGIVLTHGHEDHIG
ALPWLLQNVDVPVYGSEFTLGLVENKLREHDLDRWADLRPVRPYDRLLLGDFRFNFFPVC
HSIIEGFGLGIETPVGRVVHTGDFKIDRNPLGGHATDLAAFRKFSDEGVRLMLSDSTNVG
SEGFALTEREIKVSLREIFNTAKGRILVSLFSSHIQRIQEIFDLADAEGRKVAVSGKSLH
RNIELARDQGHLKVPKGTFIELDALDEYGDSQLVLLVTGSQGEPLAALSRIAMGEHRQLS
VRPDDLFILSSRFIPGNVKAINRVINNLYRLGAEVLYEKMHGIHASGHAHAGELTLMLQT
VRPEYFIPVHGEYRHLVKHRRLAVDCGVEDEKSMVVENGQPVTFNEDGSIELLPRIAADK
ILVDGKGVGDVGQSVLKERQLLAGEGMVIVVLVVDEASGEISMGPDIMSKGFVFEQQYMH
LLDDAKCIVLDVHENIAPGDTAKLKERIRSALRRFFRKVLGRDPVVVPLVISI
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgaactgcatgctctaccggaccgacaaatcgctggtcatggtggactgcggcctgatg
ttcccggaggactaccatttcggcgtggacgtggtcatcccctgtttcgacttcgtcctg
cgcaacaagaagatgctcaacggcatcgtcctgacccacggccacgaggaccacatcggc
gcgctgccctggctcctgcagaacgtggacgtgccggtctacggctcggagttcaccctc
ggcctggtggagaacaagctgcgcgagcacgacctggaccgctgggccgacctgcgcccg
gtgcggccctacgaccgcctcctgctcggcgatttccgcttcaattttttcccggtctgc
cactccatcatcgaggggttcggcctgggcatcgagactccggtgggccgggtggtgcac
accggcgacttcaagatcgaccgcaacccgctgggcggccacgccacggacctggccgcg
ttccgcaagttttcggacgagggcgtgcggttgatgctctcggactccaccaacgtgggc
agcgaggggttcgccctgaccgagcgggagatcaaggtctccctgcgcgagatattcaac
accgccaaggggcgcatcctggtctccctcttttccagccacatccagcgcatccaggaa
atcttcgacctggccgacgcggaagggcgcaaggtggccgtgtcgggcaagtccctgcac
cgcaacatcgagctggcccgcgaccagggacacctcaaggtgcccaagggcacgttcatc
gagctggacgccctggacgaatacggcgactcccagctggtcctgctggtcaccggctcc
cagggggagcccctggccgccctgtcgcgcatcgccatgggcgagcaccggcaattgtcc
gtgcggcccgacgacctgttcatcctctcctcgcggttcattcccggcaacgtcaaggcc
atcaaccgggtcatcaacaacctctaccgcctcggggccgaggtcctgtacgagaaaatg
cacggcatccacgcctcgggccacgcccacgcgggcgaactgacgttgatgctccagacc
gtgcggcccgaatatttcattcccgtgcacggcgagtaccgccatctggtcaagcaccgg
cggctggccgtggactgcggcgttgaggacgaaaaatccatggtcgtggaaaacggccag
cccgtgacgttcaatgaggacggctccatcgagctgctgccgcgcatcgcggcggacaag
attctcgtggacggcaagggcgtgggcgacgtgggccaatccgtgctcaaggagcgccaa
ttgctcgcgggcgagggcatggtcatcgtggtcctggtcgtggacgaggcctcgggcgag
atttccatgggcccggacatcatgagcaaggggttcgttttcgagcagcagtacatgcat
ctcctggatgacgccaagtgcatcgtcctggatgtgcacgagaacatcgcgcccggcgac
acggccaagctcaaggagcgcatccgttcggccctgcgccggttcttccgcaaggtgctc
ggccgcgaccctgtggtcgtccccctggtcatttccatctag
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