Pseudodesulfovibrio methanolicus: V8V93_10980
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Entry
V8V93_10980 CDS
T10565
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pmen Pseudodesulfovibrio methanolicus
Pathway
pmen03420
Nucleotide excision repair
pmen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V8V93_10980
03430 Mismatch repair
V8V93_10980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmen03400
]
V8V93_10980
Enzymes [BR:
pmen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V8V93_10980
DNA repair and recombination proteins [BR:
pmen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V8V93_10980
MMR (mismatch excision repair)
Other MMR factors
V8V93_10980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
DEAD
AAA_12
AAA_11
Uso1_p115_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WWX20972
LinkDB
All DBs
Position
complement(2317539..2319683)
Genome browser
AA seq
714 aa
AA seq
DB search
MSIDFENELNEAQREAVTTTEGPVLVIAGAGSGKTRTIVYRLAHLVNQGVDPAQILLLTF
TRKAAQEMLARAETILGRSLHGTSGGTFHSFAYATLRRNAADIGFESGFTLMDRADSENI
CKEVRDTLKLGKGDRSYPKKATLLDMITKSRNKELTIEAVMEREAYHLSPYLEDIQRIAD
GYAQFKREHALVDYDDLLFLLDDLLAKNEPLRNQLQARYRYIMVDEYQDTNLVQARIVKH
LAGTKGNVMAVGDDAQSIYAFRGANVANILEFPNIFEGTRVIRLEKNYRSVQPILDLTNE
ILKGATTKFDKHLYSDLKSDKLPQVVHPLSDQTQARLVVDQILELGRKHLLHDVAVLFRA
GYQSFPLEVALTRIGIDYQKFGGIRFHEAAHVKDVLSYIRLILNPHDLLAWQRAMEHIKG
VGPKTVAKIYQAMHSGDKKYMAKMVKKHEPLKELLTELDRLRAGPMKPSTILEAVLAFYQ
PILIEKYPDDYPKRQAGLEQLSQIAAGYQDMEQFIGDLSLDGDPEDEKRKENAVVLSTVH
SAKGLEWAAVIIIDLVEDRFPSRKAMQRAEDLEEERRLMYVACTRAKEELKLFVPGSVYN
RASGMSDPTLPSPFILELPDTVFERLNESYGGNLETRRRSVYTLPEPTVPAQDGGEPGDA
GPARPKADPSKLGFCKHKIFGKGKIVAQLEPNKYRVNFPGFGLKVIIGDYLEFL
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcgacttcgagaacgaactgaacgaggcgcaacgcgaggccgtgaccaccacc
gaagggccggtgctggtcatcgccggggccggttcgggcaagacccggaccatcgtctac
cggctggcccatctggtgaaccagggcgtggacccggcccagatcctgctcctgaccttc
acacgcaaggccgcccaggagatgctcgcccgtgccgagaccatcctcggccgctccctg
cacgggacctcgggcggcaccttccactcgttcgcctacgccaccctgcggcgcaacgcg
gcggacatcggcttcgaatccgggttcactctcatggaccgggcggacagcgaaaacatc
tgcaaggaggtccgggacaccctcaagctcggcaagggggaccgctcctatcccaagaag
gccaccctgctggacatgatcaccaagtcccgcaacaaggagttgaccatcgaggcggtc
atggagcgcgaggcctaccacctgagcccctacctggaagacatccagcgcattgccgac
ggctacgcccagttcaagcgcgagcacgccctggtggactacgacgacctgctctttctc
ctggatgatctgctggccaagaacgaaccgctgcgcaaccaactccaggcccgctatcgc
tacatcatggtcgacgagtaccaggacaccaacctggtccaggcgcgtatcgtcaaacac
ctggccgggaccaagggcaacgtcatggccgtgggcgacgacgcccagtccatttacgcc
ttccgcggggccaacgtggccaacattctggaattcccaaatatattcgaaggcaccagg
gtcatccggctggagaagaactaccgctcggtgcagcccatcctggacctgaccaacgag
atcctcaagggcgcgaccaccaagttcgacaagcacctgtactcggacctcaagagcgac
aaactgccccaggtggtccaccccctgagcgaccagacccaggcccggctggtggtggac
cagatactggagctgggacgcaagcatctgctgcacgatgtggccgtgctcttccgcgcg
ggctaccagtccttcccgttggaagtggcgctgacgcgcatcggcatcgactaccagaaa
ttcggcggcatccgctttcacgaggccgcccatgtcaaggatgtgctttcctacatccga
ctgatcctcaacccccacgacctgctcgcctggcagcgggccatggagcacatcaagggt
gtgggccccaagaccgtggccaagatctaccaggccatgcactcgggcgacaagaagtac
atggccaagatggtcaaaaagcacgaaccgctcaaggagctgctgaccgaactggaccgg
ttgcgcgccgggcccatgaagccgtcgaccatcctcgaagccgtgctcgccttctaccag
cccatcctcatcgagaaatacccggacgactatcccaagcgccaggccgggctggagcag
ctcagccagatcgcggcgggctaccaggacatggagcaattcatcggcgacctgtccctg
gacggcgaccccgaggatgagaagcgcaaggaaaacgcggtggtcctgtccacggtccac
tcggccaaggggctcgaatgggcggcggtgatcatcatcgacctggtggaggaccgcttc
ccgtcgcgcaaggccatgcagcgggccgaggacctggaggaggaacgccgcctgatgtac
gtggcctgcacacgggccaaggaggaactcaagctgttcgtgcccggctcggtctacaac
cgggccagcggcatgtccgacccgaccctgcccagcccgttcatactggagttgccggac
acggtcttcgaacggctgaacgaatcctacggcggcaacctggagacccggcggcgatcg
gtgtacactctgcccgaaccgaccgtccccgcccaagacggaggcgagccgggggacgcc
gggcccgcgcggcccaaggccgacccgtccaaactcgggttctgcaaacacaagattttc
ggcaagggcaagatcgtcgcccaactggaaccgaacaaatacagggtcaatttccccggc
ttcggcctcaaggtcatcatcggggactacctggaattcctgtga
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