Paramacrobiotus metropolitanus: 129580591
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Entry
129580591 CDS
T09028
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
pmeo
Paramacrobiotus metropolitanus
Pathway
pmeo03022
Basal transcription factors
pmeo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmeo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129580591
09124 Replication and repair
03420 Nucleotide excision repair
129580591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmeo03021
]
129580591
03400 DNA repair and recombination proteins [BR:
pmeo03400
]
129580591
Enzymes [BR:
pmeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
129580591
Transcription machinery [BR:
pmeo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
129580591
DNA repair and recombination proteins [BR:
pmeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
129580591
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
AAA_34
AAA_22
SUN
Motif
Other DBs
NCBI-GeneID:
129580591
NCBI-ProteinID:
XP_055327559
LinkDB
All DBs
Position
Unknown
AA seq
723 aa
AA seq
DB search
MALKPDHASRPLWVAPDGHIFLEAFSPVYKHAQDFLVAISEPVCRPERIHEYKLTAYSLY
AAVSVGLQTADIIEYLKRLSKTNLPRGIEEFIRLCTVSYGKLKLVLKQNRYFVETTHPDV
MQTLLKDDVVSQCRLRFEEQAPMTTTDIGEKGATFAGQKPAVEGADGDGETAVDKQRIPQ
DIFDFYDKIDRDDDEDNPDQKQTVTFEVKQDMIEILQKRCIELEFPLLAEYDFRHDQHNP
DINLDLKPNTTHRPYQEKSLRKMFGNGRARSGIIVLPCGAGKTLVGVTACCTVRKRCIVL
CNSGVSVEQWRSQFKMWSTADDGMVCRFTADSKDKPGANAGVCITTYNMIAHTQKRSWEA
ERIMEWLKGQEWGLMVLDEVHTIPAKMFRKVLTIVNAHCKLGLTATLVREDDKIQDLNFL
IGPKLYEANWMELQNKGYLARVQCAEVWCPMSAEFYREYLEIKSRKQLLLYVMNPNKIRA
LEFLVKFHERRNDKIIVFCDNVFALIKTAKQMNKPYIFGPTSQNERLQILQNFQHNPRLN
TIFVSKVADTSFDLPEANVLIQISSQGGSRRQEAQRLGRILRPKKGMIAEEYNAFFYSLV
SQDTTEMFFARRRQRFLVNQGYSYKVITRLAGMEDETLKLSTKEDQLELLRAVMQASDAD
ADVERIAGDSKDGAKVQMSRKVGNMASLSGADDAVYKEMKGRGRAAASKGDGKQHVLFKK
LKR
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggccctaaaacccgaccatgcctcgcgtcccttgtgggtcgctcccgatggccacatt
ttcctggaagccttctcacccgtgtacaagcacgcgcaggacttcctcgtagccatctcc
gaaccggtgtgtcggccggagcgcatccacgaatacaaactgaccgcctattccctgtac
gccgctgtttccgtcggcctgcagaccgcggacattatcgaatatctgaaacgcctgagc
aagaccaatttgccccgaggtatcgaggaattcatccggttatgtaccgtcagctacggg
aagttgaagttggtactgaagcagaatcgttattttgtggagaccacgcatccggatgtg
atgcagacgctgctgaaggatgacgtggtcagtcagtgccggttgcgctttgaggagcag
gcgcccatgacgacgacggacattggggagaaaggagccacgtttgctggacagaagccg
gctgtggaaggagcggatggggatggggaaacggcggtggataagcagcggattccgcag
gatatttttgatttttatgataaaattgatcgcgatgatgatgaagataaccctgaccag
aagcaaaccgtcactttcgaagtcaaacaagacatgatcgaaatcctacagaagcgctgt
atcgagctggaattcccgctgttggccgaatacgacttccggcatgatcaacacaatccc
gatatcaatctagatctgaaacccaatacaacgcaccgcccctaccaggagaagagcctc
cggaagatgttcgggaacgggcgtgctcgctctggtatcattgtgctgccgtgtggtgcg
ggaaaaacgctggtgggtgtgacagcatgctgtaccgtccggaaacgttgcattgtgctg
tgcaattccggtgtatccgtggagcagtggcgctcccagttcaagatgtggtccacggcg
gacgatgggatggtttgtcggtttactgcggattccaaggataagccgggtgctaatgca
ggagtgtgtatcacaacatataacatgattgcacacacccagaagcggtcctgggaagcg
gagcgcattatggaatggttgaaagggcaagaatggggcttgatggtgttggatgaggtg
cacacgatcccggccaagatgttccgaaaagtcttgaccattgtaaatgctcactgcaag
ctgggtttaacggcgacattagtacgggaggacgataagattcaggatttgaattttctc
attgggccgaaattgtacgaggccaactggatggaactgcagaataagggttatctggca
cgtgtacagtgtgcggaagtctggtgtcccatgagtgcggaattctaccgggaatatttg
gaaatcaaatcgcgcaagcagttgctgttgtacgtcatgaatcccaataaaattcgagcc
ctggagtttttggtcaaattccacgagcggagaaatgataagattattgtcttctgtgac
aatgtatttgctttgatcaaaaccgcgaagcagatgaacaagccgtatatctttggaccg
acatcccaaaacgaacgcttacagattctacagaactttcaacacaatcctcggttgaac
acaattttcgtgtccaaagttgcggataccagctttgatttgccggaagccaatgttctc
atccagatctcatctcaaggtggctctcgccgacaggaagcccagcgtctggggcgaatt
ctgcgaccgaaaaaaggaatgattgccgaggaatacaatgcgttcttttattcgctggtg
tctcaagatacgaccgagatgtttttcgctcgtcgacgacagcgtttcctcgtaaatcag
ggctattcctacaaagtcatcacgcgcctcgccgggatggaggatgaaacgctgaagctg
agtacgaaagaagaccagctggagctgctgcgggcggtgatgcaggcgtcggacgccgat
gccgatgtggagcgcatcgccggagattccaaagacggtgccaaagtgcagatgtcgcgg
aaagtcggcaatatggcatcgctcagcggagcggatgatgcggtctacaaagaaatgaag
ggacgaggccgtgctgctgcttctaaaggagatggcaagcaacacgtactgttcaagaag
ttaaagagataa
DBGET
integrated database retrieval system
