Paramacrobiotus metropolitanus: 129580860
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Entry
129580860 CDS
T09028
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pmeo
Paramacrobiotus metropolitanus
Pathway
pmeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129580860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmeo03041
]
129580860
Enzymes [BR:
pmeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129580860
Spliceosome [BR:
pmeo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129580860
Complex C
U5 SnRNP specific factors
129580860
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
PhoH
Motif
Other DBs
NCBI-GeneID:
129580860
NCBI-ProteinID:
XP_055327556
LinkDB
All DBs
Position
Unknown
AA seq
2148 aa
AA seq
DB search
MAAEATRNLQYEYKANSNLVLQADRTLIDRRPKDEPTGEVLSLVGKLEGSIMGDRAERNR
PQHLSERKVKRLKRDEDQRDFGIRKGASILSAYSEATTGANYRPRTLETRQTYEVMLQFI
QSALGDQPRDILCGAADEILDTLKNDKLKDRERKRDVESLIGPLPEERFAVLVNLGKKIT
DYGGPTEAHAALMDESVDDTTAVNVQIEESEDEDDEDIHGEIKEDEDADETEGQEAFVES
TLKANLARSETDTFARLNEKKELRPLDIDAHWLQREISKSFSNLNKYHDPLVSQNKAAEI
QKILDSAVDDRDVENRLVILLGTEHFDIIRTLRKHRQMILWCTKLQSAQSDEEKSLIKDR
MRAEPELNEILRALENPDKIDLVQREQQRQREVRKARVAELDMEVDQETADSGGQVAGMR
KMLDLNDLTFQQGSHFMANRSCDLPLNTTRTTHKGYEEWHVAAKKPKPFGENEKLVDISS
LPVHARAAFEGFTQLNRIQSRLKDYALHQDENLLVCAPTGAGKTNVALLTILRVMENHMN
SDGTFNVDKFKCIYIAPMRSLVQEMVGSFTKRLEPYNIRVDELTGDHQMSREQIEATQII
VCTPEKWDIVTRRSGERLYTSLVRLIIFDEVHLLHDDRGPVLEALVARTLRTMESSQDPI
RLVGLSATLPNYEDVAVFLRVNRDKGLFFFDNSFRPVPLEQQYIGITEKKAIKRFQIMND
IVYNKVMEYAGVNQVLIFVHSRKETAKTAKALRDACLERDSISAFLKEGSATTELLKHEA
GETKNLDLKDLLPFGFGIHHAGMTRPDRTLVEDLFGDRRIQVLVSTATLAWGVNLPAHTV
IIKGTQIYSPEKGRWTELGALDVMQMLGRAGRPQYDTKGEGILITNHSELQFYLSLMNQN
LPIESQMIGKLADLLNAEIVLGTIQTVKDAVDWLGYTYLYVRMRQNPGLYGISVDYREFD
EKLEQRRADLIHTAALQLEKSQLIKYDKKSGHLQVTDLGRIASYFYCTHETMATYNQLLR
PTLSEIELFRIFSLSGEFKHMAIRDEEKLELQKLMEQVPIPIKEGIDEPSAKVNVLLQAY
ISNLKLEGFSLMADMVYVSQSANRLIRAIFEIVLHRGWAQLAEKTLSLCKMIDRRMWQSL
SPLRQFPKINQMWVKKLEKKTISWERMYDLDPHALGELVGASQQKVGKDLHRVIHQFPKL
ELSVQIQPITRSTLRVELTITPDFQWNKDVHGESQGFWIFVEDVDSEIILHNEFFLLKEK
FAEDEHLIKFFVPMFEPVPPQYFIRVVSDKWIASETQLAVSFRHLTLPEKNPPPTELLDL
QPLPVHALRNLAYESLYDFRYFNPVQTQVFNSLYTTDDNTFIGAPTGSGKTICAEFAILR
LFSQDPDNARIVYVAPLQEIAENIHKEWEKKFRELGKRVCILTGDTSADLKLLGKNNIII
SNPEYWDILSRRWKQRKHVQNINLFIVDELQLIGGEQGPVLEVVCSRMRYMSSQLGRNIR
IVALSHSLANARDVAQWLGCSQSNTFNFHPQTRPVPLELHIQGFNISHNATRLAAMNKPV
FNAIVRHCQNKQPVIVFVPNRKMSRVQAIELVTASRILQKTKRSGFLHCTEKDLEQFFDQ
LTDKTLCDTLLSGIGYIHEGLEERDRKIVETLFSSSAIQVLVVSKELCWSLPVRAHLVII
MDTQSYDGKIHSYVDYAVTDVIQLIGAFANRPQVDQKSVCVLMCQTSKKEFFLKFLMNPL
PVESHLDHFLHDPFNAEIVTKTVENKQDAVDYLTWTLMYRRMTQNPNYYSLQNVSHRHLS
DHLSEVVENTLQDLEKCKCISIEKEMDLHPLNLGMIAAYYNINYSTIELFSLSLNQKTKV
RGLLEIISSASEFSRIPVRQREDRSLKLIKEKIPYGPQSNKLTEPHTKANLLLQAHLSRI
QVPPEMQTDLNQIILAKIMRLIYACVDVLSSNGWATPAIAAMELSQMVTQALWNKDSNLK
QLPHFTAEVIQRCQAKKIESILDVMDLEDEERNSLLQLTPAQMADVAKFCNRYPNIDMVH
NLAADKVKMGESVVVEVVLSRDEEVVGPVIAPLFPHKREEGWWMVLAETSSNTLLSIKRV
NVTSAEVKLKLDFLAPEPAGKHHLSLYLMSDCYMGCDLEHELALSVSK
NT seq
6447 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggaagccactaggaaccttcagtacgagtacaaagcgaactccaatttggtt
cttcaagctgatcgtactcttattgatcgtcgtcccaaagatgaacccacgggtgaagtc
ttatctcttgttggtaaattggagggcagtattatgggagatcgtgcggaacgcaaccgt
ccccagcatctttctgaacgaaaagtcaagcggttaaagcgtgatgaggaccaacgggat
ttcggtattcgtaagggcgcttcaattctctctgcatattcggaagcaacaacgggcgca
aactatcgacccaggacactggaaacacgccagacgtacgaagtgatgcttcagtttatt
cagagtgcactgggtgatcagccccgtgatatcctgtgcggagccgcagatgaaattctg
gacacactgaaaaatgataaactaaaagacagagagagaaagagggatgttgaatcgtta
atcggcccgttaccggaagagcgttttgcggtgcttgtcaatttgggcaagaaaataacc
gactacggtggacccacggaggcccatgctgccctcatggatgagagtgtggatgataca
acggcggttaatgtacagatcgaagagtcggaagacgaagatgatgaggatatccatggt
gaaatcaaggaggatgaagatgctgatgaaacggaagggcaggaagcgtttgtggaatct
acattgaaagctaacctggcccgatcagaaacagatacgtttgcgcggttaaacgagaag
aaggagctccgtcccttggatatcgatgcccattggcttcagcgagaaattagcaagtca
ttcagcaatttgaacaagtatcatgatccgcttgtgtcgcaaaataaagccgcggaaatt
caaaaaattttggactcagctgtggatgatcgggatgtggagaatcgtctggtcattctg
ctcggcaccgagcatttcgacattatcagaactctacgaaaacataggcaaatgattctg
tggtgcacgaagctacagtccgcacaaagtgatgaagaaaaaagcttaatcaaagataga
atgagggccgaaccagaactgaacgagatcttgcgagccctagaaaatccagacaagatt
gatttggtacaaagagagcaacagcgtcaacgggaagtgcggaaggcccgagtggccgaa
ttggatatggaagtagatcaggagactgcggattctgggggtcaggtagccgggatgcgc
aaaatgctggacctgaacgatctcaccttccagcaggggagtcattttatggccaaccgg
tcgtgcgatcttcctttaaacactacacgaacaacgcataaaggttatgaagaatggcat
gtggctgcaaagaagcccaaaccctttggagaaaatgagaaacttgtggatatcagctcg
ctaccagttcatgcgcgtgcagcttttgaaggattcacacaacttaatcgaattcaaagc
cgtttgaaagactacgcgctgcaccaggatgaaaacttactagtttgtgctcctacgggc
gcaggaaagacgaatgtggctttgttaaccattctgcgcgtaatggagaaccacatgaat
tcagatggcacatttaatgtagacaagttcaagtgcatctatattgccccgatgcgatca
cttgtgcaggagatggtcggcagtttcaccaagaggttggaaccttataatatcagggtt
gacgaattaactggagatcatcagatgtctcgcgagcaaattgaggctacccaaattatt
gtctgtactcccgaaaaatgggatattgtcactagacgctccggagagcgattgtatacg
agtctggttcgcctgattatttttgatgaggtacatctgctccatgatgaccgtggtccg
gtgttggaagctttggtagctcgcacattgcgaaccatggaatcatctcaggatccgata
agattggtcggcttatcggctacgctaccgaattatgaagacgtggctgtgtttttacga
gttaatcgcgacaaaggcctgtttttctttgataacagttttcgaccggttcctctcgag
caacagtacatcggtatcaccgaaaagaaggccattaaacgctttcagatcatgaatgat
attgtgtacaacaaagtaatggaatacgctggagtaaatcaggtgctgatttttgtgcat
tcccgaaaagagactgcaaaaacagcaaaggccttgcgagatgcatgtttggagagggat
agcatttcggctttcttaaaagaaggatcagctactaccgagcttttaaagcacgaagcg
ggtgaaactaagaatttagatttaaaagatcttttgccttttggatttggcattcaccat
gccggtatgacgcgaccggatcgtaccttggtggaggatttgttcggggatcggcgaatt
caggtcctggtctcaacggctacgctggcttggggtgtgaacttgcctgctcacacggtc
atcattaagggcacgcagatctacagtccggaaaagggtcggtggacggaattgggagca
ctggacgtaatgcagatgttaggtcgtgctggacgaccgcagtatgacacgaaaggtgaa
ggcattttaatcacaaaccactcggaactgcagttctatctctctttgatgaaccaaaac
ctgcccattgaaagccagatgattggaaaactggccgatttgctgaatgctgagatagtg
ctcggaactattcagacggtgaaggacgctgtggattggttgggatacacctacctttac
gtacgaatgcgacagaatccgggattgtatggaatttcagttgactacagggaatttgat
gaaaaattggaacagcgtcgggcagatttgattcacactgcggctctgcagttggaaaag
agtcaactgatcaagtacgataagaagagcgggcatttgcaggtgacggatttgggcagg
attgcttcgtatttctactgtacccatgaaacaatggctacttacaatcagctactgaga
ccgacgttgtcggagattgaattgttccgaattttttcgctatcgggagagttcaagcac
atggcgatccgtgacgaagagaagcttgagcttcagaaactgatggaacaggtgccgata
ccaatcaaagaagggattgatgaaccatcggcgaaagttaacgtgttgctacaggcgtac
atctcgaatttgaaacttgaaggcttttcccttatggcagacatggtttatgtatcgcag
tcagccaaccgtttaatccgggccatttttgaaattgtcctgcatcggggctgggctcaa
ttggcggaaaaaactctgtccttatgcaagatgattgatagaagaatgtggcagtcctta
tcaccattacgccagttccccaagattaatcaaatgtgggtgaagaaactggaaaagaaa
acgatttcatgggagcgaatgtacgatctggatcctcatgcgctgggcgagttggtgggg
gctagtcaacagaaagtcggtaaagatttgcaccgggttattcatcagttccctaagttg
gaactttcagtgcaaattcagcctataacccgttctacgttgcgcgtggaactgactata
actccggatttccagtggaacaaagatgttcatggggagtcacaaggattttggatattc
gtggaagacgtggactcagaaatcattctacacaatgagttctttcttctgaaggaaaaa
tttgctgaagatgagcatctgatcaagttctttgtgcccatgttcgagccggttccgcct
cagtactttatccgtgtcgtctcagataagtggatcgcatcggaaactcaactagcggta
tcttttcgccatttaacgctgccagaaaaaaatccaccgcccacggaattgttggatctg
cagccattgcccgtgcatgcactgagaaatcttgcgtacgagtccttgtacgactttcgg
tatttcaatccggtgcagacgcaagttttcaactcgttgtataccacggatgacaacaca
tttatcggggcacctactggaagcggtaagacaatctgtgcggagtttgccatcctgcgt
ctgttttcacaggatcctgacaacgccaggatcgtttacgtcgcaccgcttcaagaaatc
gccgagaatatccacaaggagtgggaaaagaaattcagagagcttggaaagcgagtgtgt
atactgacgggcgacacgtcagcggatctgaaattgttgggcaaaaacaacatcattatt
tccaatccggaatattgggatatactgtctcggcggtggaagcagagaaagcatgttcag
aacataaatttgttcattgtagacgaattgcagttgatcggtggagagcaaggccccgta
ctggaagtagtatgctcccggatgcgctatatgtcttcgcagttgggccgaaatatccgc
atcgtcgcgttgtcgcattcacttgccaatgcccgggatgtggctcagtggctcggttgt
tcgcagtctaatacgtttaactttcacccccaaacacgtcccgtgccgttggagctccat
atccaaggatttaacatcagccacaatgctacgcggttggcagcgatgaataagccggtt
ttcaatgcaattgtacgacattgtcagaataagcagccagttattgtgttcgttcccaac
cggaagatgagtcgggtgcaagccatcgagttggtgacagcatccagaattcttcagaag
acgaagagaagtggattcctccattgtaccgaaaaagatctcgaacagttttttgatcaa
ctgactgataagactttgtgcgatacgttgttgagcggaattggatacattcatgaaggg
ctagaggaacgtgatcgcaagatcgttgagacattattctcgtctagtgccatccaagtg
ttggtggtgtcaaaagagctctgttggtctttgcctgtgagagcgcatttggttattatc
atggatacgcagtcgtatgatgggaaaattcattcgtatgtggattatgctgtaactgat
gttatacagttaattggagcatttgccaatcgtccacaagttgaccagaaatccgtgtgt
gtgctgatgtgtcagacgtccaaaaaagagttctttttgaaattcttgatgaaccctctt
cctgtggaatcccacttggaccacttccttcacgatccattcaacgcggaaattgtaacg
aagaccgtggagaataaacaagacgctgtggattacctgacttggaccttaatgtaccgt
cggatgacccaaaatcccaattattattccttgcagaatgtgtctcaccggcatttatcg
gaccatttgtcggaagtagtggaaaacaccctgcaagatctggagaagtgcaaatgcata
tcgattgagaaggaaatggatttgcatccgttgaatttgggcatgattgcagcgtactac
aacatcaactattccactatcgaattatttagtctgtcgctgaaccagaaaaccaaagtg
cgcggtttacttgaaattatttcctcagctagtgaattcagtcgtatccctgtacgtcaa
cgggaagacaggtctttgaaactgatcaaggaaaagatcccgtatggcccacaatcgaac
aaactgactgagccccataccaaagcgaatttgctcctgcaagcccatttgtcgcgcatc
caagttccaccggagatgcagaccgatctcaaccagattattttggcaaaaattatgcgt
ttaatttatgcttgcgtcgatgtcctgtcatccaatggatgggcgactccggccattgcg
gcaatggagctctcgcagatggttacacaggcactgtggaacaaagattcgaacttgaaa
caactgccgcatttcacagctgaggtgatccaacgatgccaagcaaaaaagattgagagc
atattggacgtgatggatttggaggatgaggaacggaacagtcttctgcagttaacgcca
gcacaaatggcggatgtagccaaattctgcaatcgttatcccaacatagatatggttcat
aacctagctgctgacaaagttaaaatgggggagagtgttgtggtggaagtcgttttatca
cgcgatgaggaagttgtaggaccggtcatcgcgcctctttttccacacaaacgcgaagaa
ggctggtggatggtgttggcagaaacgtcgtctaatactctgctctccatcaagcgtgta
aacgttacttcggctgaagtcaagctgaaattggatttcttagcacctgaaccagccggg
aaacaccacctttctttgtatttaatgtcggattgttatatgggatgtgatctggaacat
gagctagcgttgtctgtgtcaaaataa
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integrated database retrieval system
