Paramacrobiotus metropolitanus: 129581587
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Entry
129581587 CDS
T09028
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pmeo
Paramacrobiotus metropolitanus
Pathway
pmeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129581587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmeo03019
]
129581587
03041 Spliceosome [BR:
pmeo03041
]
129581587
03009 Ribosome biogenesis [BR:
pmeo03009
]
129581587
03016 Transfer RNA biogenesis [BR:
pmeo03016
]
129581587
Enzymes [BR:
pmeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129581587
Messenger RNA biogenesis [BR:
pmeo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
129581587
Spliceosome [BR:
pmeo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129581587
Complex C
U4/U6.U5 tri-SnRNP related factors
129581587
Ribosome biogenesis [BR:
pmeo03009
]
Eukaryotic type
Pre-60S particles
Helicases
129581587
Transfer RNA biogenesis [BR:
pmeo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
129581587
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
129581587
NCBI-ProteinID:
XP_055328735
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MSTIENAIASDDLPSSSDINADAHEDLDSDEEGDEYLIQGTSSGSRLMYGGTKRVHQSPS
PERMDTSSNSLSKRACLSMDTVELQDNQKFHRMEVRSIPGLVSCIHEVAIPPGADYIPLQ
PRQGPPLREYKFVLDSFQTQAILCIDNLQSVLVAAHTSAGKTVVAEYAIAKGLKNNQRVI
YTSPIKALSNQKYREMMDHFQEQVGLMTGDITINPNASVLIMTTEILRSMLYRGNEIMRE
VGWVIFDEIHYMRDPERGVVWEETIILLPDKVRFVFLSATIPNAIQLAEWIAWLHKQPCH
VVYTEHRPVPLQQYLYPAGSKGLYLIMDENRNFREANFATAMQHLQEGSTSDELSRKQQA
HRNKSGQATVTKLVQMVMERNYEPVIVFSFNRRECEQYATSMHKMDFNTDEEKEMVDAVF
KNAIEVLSPDERKLPQILNTVPLLKRGIGIHHSGLLPLIKETIELLFQEGLIKVLFATET
FAMGLNMPARTVLFTSLRKFDGKENRFITSNEFIQMSGRAGRRGIDTRGIVLIQVDEQIP
SAVLKNIVKGSADPLKSAFRLTYNMILNLLRVDGISPEYILERSFLQYQSYADVPKTLEE
ISKKKEELEKLVIPRPEDLSQYFRILNEVTRLTKTVQEIITSEENVLAWLTPGRLLRLRH
NEMDFGWCPFLQYKKTKSEKKKDKSAENSEICLIVALPVRDLANLEGSDGLSYLKPVSIQ
EAKDALIIKANLGAIQALSSLKLYVPEDLSNKDGRLQLLKSLKEVHKRFPDGMPALDPVN
HMKIKDEKFTDSVKLLTVLEARMKALPIHGDPAKDDLMLLHKKKISLEKDISRMEKEVKD
TTKVGLHDELKSRIRVLKKLGYCNADGICSLKGRAACEISCADELLLTEMLFAGHFNDLE
PAYVVSLLSCFVAENSKSFGNEAPKINERLSGVLRQAQEISKKIATVSKECDVPEEKAVT
RELKPELMDICLQWCNGSSFAEICKSGIYEGTIVRCLRLLEELLRQMAAAAKVIGNEPLE
ERFTSGILKLKRDIIFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgattgaaaacgccattgcttcggacgatcttccatctagttcggatatcaat
gcggacgcacatgaggatctggatagtgacgaagaaggcgatgaatacttgatccaaggg
acttcttcaggttcgcgattgatgtatggaggaaccaaaagggtccatcagagtccctca
cctgaaagaatggatacctcctcgaattctctatcgaaacgggcatgcctgtcgatggac
acggtggaactgcaagataatcagaaattccaccgaatggaagtacgctccattcctgga
ctggtgtcatgcatccacgaagtggccatccctccgggcgccgactacattccgctccag
ccccgtcaaggcccgccgctccgcgagtataaattcgttctggactctttccagacgcag
gccatcctctgcattgataatctacaatcggtgctggtggcggctcacacatcggcgggg
aaaacagtggttgcagagtatgctatcgcgaaaggcttaaaaaacaatcaacgtgttatt
tacacatcacccataaaagccttgagtaaccagaaatatcgggaaatgatggaccatttc
caggagcaagtcggtctcatgactggcgatatcactataaatcccaatgcgagcgtgctg
attatgaccactgagattttaaggagcatgctttaccgcggaaatgagataatgcgtgaa
gtcggatgggtgatattcgatgaaattcattacatgcgcgatccggagagaggtgtcgta
tgggaagaaacaattatcctcttaccagataaagtcagattcgtcttcttgtccgccaca
attcccaatgccattcagctggcggaatggatagcctggctgcacaaacaaccctgtcac
gtcgtgtacacagaacaccgtcccgtgcccttacaacagtatttgtatccggctggaagt
aaagggctctatctcatcatggacgagaacaggaacttccgagaagcgaatttcgcaacc
gccatgcagcatttacaggaaggatctacatcggatgaattaagcagaaagcaacaagcc
catcgcaacaaatcaggccaagccaccgtaacgaagttggtgcagatggttatggaaaga
aattacgaaccagttattgtcttttccttcaaccgacgcgaatgtgagcagtacgctacc
agcatgcacaaaatggactttaatacggatgaagaaaaagaaatggtcgatgccgtgttt
aaaaacgcaatcgaagtattatcgccggatgagcgcaaattgcctcagattctcaatacc
gttcctcttctcaaacgtggcatcggtatccatcattctgggctgttgcccttaatcaaa
gaaacaattgagctgttgtttcaagaaggattgattaaagtattgtttgccaccgagacg
tttgctatgggtttaaacatgccagcaagaacagttttgttcactagtttgaggaaattc
gacggaaaggagaacagatttattacttccaacgaatttattcagatgagtggtcgtgcc
ggacgtcgaggaatcgatactcgtggcattgtgttaatccaagtggacgaacagattccc
tcggcggttttgaaaaacattgtcaaaggcagcgccgatccgttaaaaagcgcttttcgg
ttgacatataatatgatcctgaatcttctacgagttgacggaatctctcctgaatatata
ttggagaggtctttcttgcagtaccagagttatgccgatgttcccaaaacactcgaagaa
atatcgaagaagaaagaggaattggagaaactggtgatacctcgacccgaagacttaagt
cagtactttcgtattctaaacgaagtgacgcggttgaccaaaacggtgcaagaaatcatc
accagcgaggaaaatgttttggcctggttaacaccgggacggttgctacgtctgaggcac
aacgagatggatttcggttggtgtccgttcctacaatacaagaaaaccaaaagcgaaaag
aaaaaagataagagcgctgagaactccgaaatttgcttgatagtagcgctgcctgtcaga
gatttggccaatctggaaggatcagatggtctcagctatttaaagcctgttagcatacaa
gaggcgaaagatgctttgataatcaaagcaaaccttggagctattcaggctttgagcagc
ttgaagctgtatgtaccagaagatctgtcaaacaaagacggacgattgcagttgttgaag
tctctgaaggaggttcacaagcggtttccggatggtatgcccgcacttgaccctgttaac
cacatgaaaattaaagatgagaaattcaccgactcggttaaattgttgactgttttggaa
gcccgaatgaaggcgctaccaatccatggtgatccagccaaagatgatctgatgcttctc
cataaaaagaaaatctcactggagaaagacatttccagaatggagaaagaggttaaggac
actaccaaagtgggactgcatgatgaactgaaaagtcgaattcgagtgctgaagaaactg
ggttactgcaatgccgacggcatatgttctttaaaagggcgagctgcctgtgaaattagc
tgtgcggatgaacttttgttgacggaaatgctcttcgccggtcacttcaatgacctggag
ccggcctatgttgtgtcgttattgagctgcttcgtagccgagaacagtaaatcttttggc
aatgaagcgccaaagatcaatgagcggttatcgggtgtccttcggcaagctcaagagatc
tcgaagaaaattgcgacagtttccaaggaatgtgatgtgccagaggaaaaagccgttacg
cgcgagctcaaacccgaattgatggatatttgcctacagtggtgtaatggttccagcttt
gccgaaatctgcaaaagtggtatttatgaagggaccattgtacgctgcctacggttactg
gaagaactactgcggcaaatggctgcagcggccaaggttatcggtaatgagccgctggaa
gagcgcttcacctcgggtatcctgaagctcaagcgtgatattatatttgccgcgagcctg
tatctgtga
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integrated database retrieval system
