Paramacrobiotus metropolitanus: 129581985
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Entry
129581985 CDS
T09028
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pmeo
Paramacrobiotus metropolitanus
Pathway
pmeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129581985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmeo03019
]
129581985
Enzymes [BR:
pmeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
129581985
Messenger RNA biogenesis [BR:
pmeo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
129581985
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
Motif
Other DBs
NCBI-GeneID:
129581985
NCBI-ProteinID:
XP_055329299
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MAEAIPRVSSQTDLTTGPYGKLPVLARELKNPDEHKISPLEEMRINVDKVPIIHLWMAQG
QAEVFGAELSTDRIYTFLKGSKISIWSWTGCTIMIEGKPKILKTKDSRVTTIHFNFHNCL
EQHREVAVKNDVVGPRILVLGNANSGRSVFCRLLLNYAARMRGDDRRNPIFVDLDFIQPD
LAVPGTIACCQFDRPTDPMFDYYYYRKFVLPYGYLNTDPETNPNSESNLELLHSQIRKLG
AVIEKKFDNDRRARHSGAIINCFSVVKEYSYSHIFVIAKAFRVNFIVVLGNKWMVDELQN
HPSRQDLEPDLQVISMPKAQDIVESTQEERRLHREARIRHNIYGHPLRSPKHRPFKHEVE
FSDILLCKLGNPAINKALLPENVDLVRVKTAAYPLQLKEVNYLVDHILYITNVDTAEKVA
SEGSVIGYLLVKGVTASAQSKKLTLLSNFETLPKKVLLTSAIQLKDS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcgatcccgcgcgtttcatcccaaaccgacctgacaacgggcccgtatggg
aagttgccagtgctagctcgggaactgaaaaatcctgacgagcataaaatcagcccattg
gaagaaatgaggataaatgttgataaagtgccaataattcatctttggatggctcaaggg
caggcggaagtttttggcgccgagctatcaacagacaggatttatactttcttaaaaggc
agcaaaattagcatatggtcgtggactggatgtactattatgattgagggcaagccgaaa
attttgaaaacaaaagacagccgagttacgaccattcatttcaatttccacaactgcctg
gaacaacatcgagaagtcgctgtaaaaaatgatgtggttggtcctcgaatactggttctg
ggcaatgccaactccggacgaagcgtattttgccggttattgttaaattatgctgctaga
atgagaggggacgacagaagaaatcccatttttgttgatctggattttattcagccagat
ttggcagttcccggcacaatcgcctgttgtcagtttgatcgtccaactgatcctatgttt
gattattattactaccggaaatttgtgcttccttatggctaccttaatactgatcccgaa
actaatccgaattcggaatcgaatctcgaactgctccattcccaaattcgtaaattggga
gccgtcatcgagaaaaagttcgacaatgatcgccgtgccagacacagcggagccattata
aattgtttttctgtggtcaaggagtacagctatagccacatttttgttattgcgaaagca
tttcgagttaattttattgtggtgttgggcaataagtggatggtggatgaactgcaaaat
catcccagccgacaagatttggaaccggatctacaggttatttccatgcccaaagcacaa
gatattgtggagagtacccaggaggaacgccgactgcaccgtgaagcgcgcattcgccac
aacatatacggccatccccttaggtcacccaagcatcggcctttcaaacatgaggtggaa
tttagcgatattcttctgtgtaaactgggaaatccagccataaataaggcattattgccg
gaaaacgtggatctcgtcagggtgaaaacagctgcctatccgttacagttgaaggaagtc
aactaccttgtagatcatattctgtacattacaaatgttgatacggcggaaaaggtggcg
tctgaaggaagcgtgattggttatttgttagtgaagggtgtcacggcaagtgcgcagtcg
aaaaagcttactctgttgtcaaattttgaaacattaccaaagaaagtgcttctgactagc
gccatccaattgaaagattcctaa
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