Paramacrobiotus metropolitanus: 129584686
Help
Entry
129584686 CDS
T09028
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pmeo
Paramacrobiotus metropolitanus
Pathway
pmeo03013
Nucleocytoplasmic transport
pmeo03015
mRNA surveillance pathway
pmeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129584686
09122 Translation
03013 Nucleocytoplasmic transport
129584686
03015 mRNA surveillance pathway
129584686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmeo03019
]
129584686
03041 Spliceosome [BR:
pmeo03041
]
129584686
Enzymes [BR:
pmeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129584686
Messenger RNA biogenesis [BR:
pmeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129584686
Spliceosome [BR:
pmeo03041
]
Complex C
Other components
EJC/TREX
129584686
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129584686
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Utp25_C
AAA_19
Motif
Other DBs
NCBI-GeneID:
129584686
NCBI-ProteinID:
XP_055332949
LinkDB
All DBs
Position
Unknown
AA seq
459 aa
AA seq
DB search
MAAAVQNGHGEAELLDYEEEVEEQVTSNGSAEADQNQEPMDDGDRVVMHTPYHGHVSLHT
AGFRDMLLKPEILKGIFDAGFEHPSQVQAECIPKAMSGVDILCQAKSGMGKTAVFVISTL
QMIDPQATTQPTVLVLAPTRELAYQIAAQYRRFRRHLRGIRIGLFYGGTPLLGDIQNLRA
GPVHIVLGTPGRLKALVRERVLNLSHIKHFIVDECDKVLGQLDMQSDVHEIFLATPFEKQ
VMMFSATYQTAVLQDCRKYLSKEAFEVLVEDPAKLVLKRLVQHYKQVTEDKKYRMLKDVL
DVIEWNQVIIFVNTVTRASTLGTLLSEEMTEVIMIHSAMAQEERLARYQQFVDYRKRILV
ATDLFGRGMDIERVNVVINYDCPTNPDQYLHRIARAGRFGTCGLAVTFVASDVDAQKLND
IQDRYDTDISALPDQLDPSLYTSEEAAESSSPDSIDSAN
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagctgttcaaaatggacacggggaggcggaactgctggactatgaggaagaa
gtggaagaacaggttaccagtaatggcagtgcggaggctgaccagaaccaagaacccatg
gacgatggagaccgtgtcgtgatgcatacgccctatcacggtcacgtcagcctgcacaca
gctggcttccgagacatgttactgaaacccgaaatcctgaaggggatcttcgatgcgggc
ttcgagcatccgtcccaagtacaggcggaatgcatccccaaagcgatgtcgggtgtggat
attttgtgtcaggctaaatccggcatgggcaaaacagcggtgttcgttatttcgaccttg
caaatgatcgacccgcaagccaccacccaaccgaccgtcttggtgctggcaccgacgcgt
gaattggcctaccaaatcgcagctcagtaccgtcgtttcagacgacatttgcgtggaatc
cgcataggccttttctacggcggcacaccgcttttgggtgacatacagaatttgcgcgcc
ggccctgtccacatcgttctgggcacaccgggccgcctgaaggctctggtccgtgagcgc
gtgctgaatctgtcgcacatcaagcactttattgtggatgaatgcgataaggtgctgggc
cagctagacatgcagtcggatgtgcacgaaattttcctggcgacaccgttcgaaaagcaa
gtcatgatgttcagtgccacgtaccagaccgcggttttgcaggattgccgaaagtatttg
tcgaaggaagcgtttgaagtactggtcgaggatcctgctaaactggtgctcaaacgtctc
gtgcagcactataagcaggtcaccgaggataagaagtaccgaatgctgaaggatgtcttg
gacgttattgaatggaatcaggtgattattttcgtaaataccgttacccgtgcttcaaca
cttggaactctcctgtctgaggagatgacggaagtcattatgattcactctgcaatggct
caggaggaacgcttggcacgttaccagcagtttgtggattacagaaagcgaattctggtg
gccacggacctttttgggcgcggtatggatattgagagagtgaatgtggtgattaattac
gattgccccacgaacccggaccagtatctgcaccgcattgctcgggccggacgcttcgga
acgtgcggattggctgtgacctttgttgcttccgatgtagatgcacagaagctgaatgac
attcaggatcgttacgatacggatatttccgcgctccctgaccaactggacccgtctctg
tataccagcgaagaagcggctgaatcttcatcgccggatagcattgattctgctaactga
DBGET
integrated database retrieval system
