Paramacrobiotus metropolitanus: 129585441
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Entry
129585441 CDS
T09028
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pmeo
Paramacrobiotus metropolitanus
Pathway
pmeo03013
Nucleocytoplasmic transport
pmeo03015
mRNA surveillance pathway
pmeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129585441
09122 Translation
03013 Nucleocytoplasmic transport
129585441
03015 mRNA surveillance pathway
129585441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmeo03019
]
129585441
03041 Spliceosome [BR:
pmeo03041
]
129585441
Enzymes [BR:
pmeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129585441
Messenger RNA biogenesis [BR:
pmeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129585441
Spliceosome [BR:
pmeo03041
]
Complex C
Other components
EJC/TREX
129585441
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129585441
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
129585441
NCBI-ProteinID:
XP_055334083
LinkDB
All DBs
Position
Unknown
AA seq
433 aa
AA seq
DB search
MALMQASEEILDYEDADDVVVPNGKHDHNLDDHALDYMQEDYVGEASVHTAEFKDLMLKP
ELLRAIQDAGFKHPSEVQANCIPKAVLGMDLVCQAKSGFGKTAVFVISTLQELDPSDPNQ
PSVIVLLPTRELAFQTAAQFKRFKKYLPSITLSLFFGGIAYEKDITNIRNRPDLNVIIGT
PGRLAALVRDKILKLDHVKHFIIDECDKMLHQEDMRAQIKVIFDATPAKKQVMLFSATLS
KKIMPICEEFVQDPYRHLVDDCAKLTLKHIVQYYVKITEAGKLEWLIHILDTLEYNQIII
FVNTVDRAQMLGTHLFENNYPSVMIHSGMEQIERLARYQQFKSFSSRIMVATDLFGRGMD
IERVNIVINYDCPFNSDQYLHRIGRGGRFNRKGLAVTLVSDENDCKNLSAVQDRFDIDIA
PIPDELDETLWAN
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggcgctaatgcaagcgtctgaggaaattctcgattacgaggacgccgacgatgtggtg
gtgccgaatggcaaacacgatcacaatcttgatgatcatgcgctggactacatgcaggag
gattatgtgggcgaggccagcgtgcataccgcggagtttaaggaccttatgttgaaaccc
gagcttctgcgcgctatacaggacgctggatttaagcatccgtcagaagtgcaggcgaat
tgcatcccgaaagccgtactgggaatggatttggtgtgccaggccaagtccggatttggc
aaaactgcggtcttcgtgatttccactctgcaggaactggatccaagcgatcccaatcag
ccgtccgttattgtccttttgccgactcgcgaactggcctttcagacggctgctcagttc
aaacggttcaaaaagtaccttccatccataacgctgtcgttgtttttcggtggcatcgcg
tacgaaaaggacatcacgaacattcgcaaccgcccggatctgaacgtcattatcggcact
ccaggtcgtttagcagcgctcgtccgcgataagattctcaagttggatcacgttaagcac
ttcatcatcgacgagtgcgacaagatgttgcaccaggaagacatgcgcgcgcagataaag
gtcatcttcgacgcgactccggcgaagaagcaagtgatgctattcagcgccacgttatcg
aagaaaattatgccgatttgtgaagagtttgtgcaggacccatacaggcatctggtggat
gactgcgccaagttgacattgaagcacattgtccagtattacgtgaagatcaccgaagca
ggaaaactggaatggttgattcatattctggataccttggagtataatcagatcattatt
ttcgtgaacacggtggaccgggcgcagatgctgggcactcatttgtttgagaacaattac
ccttccgtcatgatccattcaggaatggagcagatagaacgactggcacgatatcagcag
ttcaagtcgttttcatcccgaattatggtggctaccgatttatttggtcgaggtatggat
atcgagcgcgtgaacatcgtgatcaattacgactgtccgttcaacagcgatcagtatctg
catcggataggccggggaggccgtttcaatcggaaaggattggccgtcacgctggtatcc
gacgaaaatgattgtaagaacttgtccgctgttcaggatcggttcgatattgacattgct
cccataccggatgagttggatgaaactttgtgggctaattga
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