Paramacrobiotus metropolitanus: 129585937
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Entry
129585937 CDS
T09028
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pmeo
Paramacrobiotus metropolitanus
Pathway
pmeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129585937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmeo03019
]
129585937
03036 Chromosome and associated proteins [BR:
pmeo03036
]
129585937
Enzymes [BR:
pmeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129585937
Messenger RNA biogenesis [BR:
pmeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
129585937
mRNA degradation factors
5'-3' decay
Decapping complex
129585937
Chromosome and associated proteins [BR:
pmeo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
129585937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
DUF3847
Motif
Other DBs
NCBI-GeneID:
129585937
NCBI-ProteinID:
XP_055334836
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
MDNRPMGANADRLLNKLSGQNWKEGVLPPPKDPRCQTSDVLNSTAKSFEEFGLKRELLMG
LYEMGFETPSPIQEKAIPEALKGGHVIARAKNGTGKTGAFMVPVLEKIDATDTSIGRPQA
LILVPTRELALQTSAICMAMGKHLNVKVMVSTGGTDLMEDILRLQQVVHVIVATPGRILD
LLMPKMDFETGTEHRLINSSACNIAVLDEADKLLSQDFGQMVNQILMELPSERQILLFSA
TFPVSVESFKARLKAPKVINLMNELTLKGISEFYVYLEERQKVHCLNTLFSKLEIRQAII
FVNSSKRAALLAKKIVDLGYSCFYIHSRMSQDHRNKIFHDFRNGDVRNLVCTDLFTRGID
VRAVNVVINFDFPRMSETYLHRIGRSGRFGHLGIAVNLITDADRDSLHRIERELGTDIKP
IPKEIDKRLYVAAYQTSGDADEILKSVKIKMEELSLKAGPGMPIPGATGTAQQQLGMSSA
C
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggacaatcgaccaatgggtgcgaatgccgatcgcttgctcaacaaactgagcggacag
aactggaaggaaggtgttttaccaccgccaaaggatcctcgttgccagacaagcgatgtg
cttaattcgacggccaaatctttcgaagaattcgggttgaagcgggagctgctgatggga
ttgtacgaaatgggattcgaaacaccgtcacccattcaggagaaagccattccggaggct
ctgaaaggtggccatgttattgcacgtgccaagaacggaaccggcaagactggtgctttc
atggttccggtgctggagaagatcgacgcgaccgatactagcattggtcgtcctcaggcc
ttgatcctggttccaacccgagaattggcactgcaaacttcggctatctgtatggccatg
ggaaaacatctgaatgtcaaggtcatggtttccactggtggcacggatctgatggaggat
attctgcgactgcagcaagttgtgcacgtcattgtggctacacctggacgtatcctagat
ttactgatgcccaagatggacttcgaaaccggaaccgagcatcgtttgatcaacagctcg
gcttgcaacatcgctgtcctggatgaagccgacaagctactctcgcaggactttggacaa
atggtcaatcagattctcatggaacttccgtcggaacgacagattctgttgttctctgca
acattccccgtttcggtcgagagcttcaaggctcgtctgaaggctccgaaggttatcaac
ttaatgaacgaactgactttgaaagggatttccgaattctacgtctatttggaagaaaga
cagaaggtccattgtttgaacactcttttttccaaactggagattcgccaagcgatcata
ttcgttaattcctccaaacgcgctgctctgttggcgaagaagatcgtggacttgggatac
tcatgcttctacattcactctcggatgagtcaagatcatcgtaacaagatcttccacgac
ttccgaaacggagatgtgcgcaatctggtctgcaccgatctgttcactcgaggaattgac
gttcgtgctgtgaatgtggttatcaatttcgactttccgcgcatgtccgaaacctacttg
catcgcattggacgatcgggccgcttcggtcatctgggcatcgctgttaatctgatcacc
gatgccgaccgcgacagtctgcaccgtattgaacgcgaactgggcacggacattaaacct
attcccaaagaaatcgacaagcgtctgtatgtggctgcttatcagaccagcggcgatgct
gatgagattctcaagagtgttaaaatcaaaatggaggaactgagtttgaaggctggaccc
ggaatgcccatcccgggagcaaccggtaccgctcagcaacaattgggaatgtctagcgcc
tgttag
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