Paramacrobiotus metropolitanus: 129592582
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Entry
129592582 CDS
T09028
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pmeo
Paramacrobiotus metropolitanus
Pathway
pmeo03013
Nucleocytoplasmic transport
pmeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129592582
03015 mRNA surveillance pathway
129592582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmeo03019
]
129592582
Enzymes [BR:
pmeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129592582
5.6.2.5 RNA 5'-3' helicase
129592582
Messenger RNA biogenesis [BR:
pmeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129592582
mRNA cycle factors
Common to processing body (P body) and stress granule
129592582
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
UPF1_Zn_bind
Viral_helicase1
Helicase_RecD
DEAD
nSTAND3
UvrD-helicase
SLFN-g3_helicase
PhoH
ResIII
PIF1
DUF87
AAA_16
AAA_22
AAA
NPHP3_N
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
129592582
NCBI-ProteinID:
XP_055344624
LinkDB
All DBs
Position
Unknown
AA seq
968 aa
AA seq
DB search
MPVAKATTSADGAEMLPADVMRCAYCGLDDAQYLTFCEAENCQKWFCNGSSDFSKKAYKP
YSHIVAHCTKAKHTAVSVFSGIPEGTSKRKRQSMKFIFDHCTYKPKCSSTKCRSRNILDL
GVEDTAHPFDPEKICCRKDAVRAHKVGRKLWHTLVAAHPETGVTQSVEEPFFIRLASWLV
PAVPKKIMRKHSKGALKKWGLERLDRDSIGFLEEFWRWKPDGTKEEFLNWKMTIDSYYET
RRMQFTDEGDYSKYWDELVAEIARQEMGTVESLPPIRIPEGQEAKWLNGSDIILTVPYGM
FTDFLERGRPVMVAWVVMSNGEEKTMWYRDATISWMKPGDNGSTMMLHCFKEVARDDYRE
KRNLQIRIVYNDINFWRMHQALYKIEHDPKCMSREILYALLGCKMEAQELPEESASEAGE
SMSCEMLGSSDESHDEEIQVENFQPVVKRFPRTMIRSNLRLMAPQPFFAEYTVNGYQHDF
RRFTFQNMRLPECLNKGQRQAVRMALLNTVCLIQGPPGTGKTQTAAVIVANLVKDPEGKI
LVCAPSNVAIDHLTLKLIEASKDFKILRLLPHGRDIESDAMPDVVKQYTVNARFAKERSG
HEATDEEMRAFEKQCVQEAQIICCTCNSAGLASLRGIPFPYVLIDEAAQAMEPECLIPIT
KACEKLILIGDPSQLGAVVRFPNMQRSQLTMSLFQRLWEQCPSIMLTTQYRMHPNISEMV
SQITYDNKLVNDQSVYNRPPPTSFSEQLFESAPPPSQSGACKKKSVPILFVDAGYNDEIS
ASGTSFVNMIESHFIARLVANILHNGDVFSDPAKKPKPEDIGIITFYNGQRPQLEIDLKV
HPRVTASCLGSGKIEINSVDGFQGREKEIIILSCVRSADTFCGRSTLGFTDDRQRLNVAM
SRAKTALFVVGSRRIFQHSAVWRQYFEYIPQKSLEAVCHALPEPCSTKPQPCKVCRSRRP
VVVEAVEQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccagttgccaaggcgacaacttccgccgacggagcggagatgcttccggcggatgtg
atgcgatgcgcatactgtggtttggacgacgcacaatacctgacattctgcgaagcggaa
aactgccaaaaatggttttgcaatggcagcagcgattttagcaaaaaggcatataagccg
tacagtcacatcgtcgcccactgcaccaaagccaaacataccgcagtttcggtgtttagc
ggcatcccggaggggacttccaaacgtaaacgtcagtctatgaaatttattttcgatcac
tgcacctacaagccgaagtgctccagtaccaaatgccgttcacgcaacattctggacctc
ggcgtggaggatacagcacatccgttcgatcccgagaaaatatgctgccggaaggatgcg
gtccgtgctcataaagtggggaggaagttgtggcacacgttggtggcggcccaccccgaa
accggggttactcagtcggtggaagaaccgtttttcatccgcttagcgtcgtggctggta
ccggctgttccgaaaaagatcatgcggaaacactctaaaggggctttgaaaaaatggggt
ctggagcgtttggatcgcgattctatcggtttcttggaggaattttggcggtggaagccg
gatggaacaaaagaagagtttcttaactggaagatgactattgacagttactacgaaact
cgcaggatgcaatttactgacgagggagattattccaagtactgggatgaactggtggct
gaaatagcccgccaagaaatgggcacggtggagtccttgccacccattcgcattccggag
ggacaagaagccaaatggttgaacggttccgacatcatcctgaccgttccctatggaatg
tttacggattttctggagaggggacgtccagtgatggtggcctgggtggtaatgagtaac
ggcgaagaaaagacgatgtggtaccgggatgccaccatttcctggatgaaaccaggcgac
aacggttcgactatgatgctgcattgcttcaaggaagtcgctcgcgatgactatcgcgag
aagcgcaatctgcagatacgaattgtctataatgatatcaatttctggcgcatgcatcag
gcgctgtacaaaattgagcatgatccgaaatgtatgtccagggaaattctgtacgcattg
ttggggtgtaagatggaagcgcaggaactgccggaggaaagtgcgagcgaagccggcgaa
tctatgagttgtgaaatgctgggaagttctgacgagtcccatgatgaagaaattcaggtg
gaaaattttcagcctgtcgtgaaacgctttccacgcacgatgatacggtctaatttgcgg
ttgatggcaccacaaccgtttttcgctgagtacaccgtgaacgggtaccagcacgatttc
cgccgttttacgttccagaacatgagactgccggaatgcctgaataaaggtcaacgccaa
gccgtcaggatggcactactgaacacagtctgcttgattcaaggcccaccggggaccggg
aaaacgcagacggcagcggtgattgtggccaatttggttaaggatccggaggggaagatc
ttggtgtgcgcccccagcaatgtggccatcgaccatctgacccttaagctgatcgaagcc
agcaaggatttcaagattctgcggttgctcccgcatggacgggatatcgagagtgatgcc
atgcccgatgttgtcaagcagtacaccgtcaacgcccgcttcgccaaggagcggtcgggt
catgaagcgacggatgaggagatgcgggcatttgagaagcagtgtgtccaggaggcccag
atcatatgctgcacctgtaacagcgccggtttggccagtttgagaggcattccatttccg
tatgtactgatcgatgaagcagcacaggcaatggaacctgaatgtctgatccccatcacg
aaagcctgcgaaaagctgattctgatcggggatccatcacaactgggcgccgtcgtgcga
tttcccaacatgcagagatcacagctgaccatgtcgttgtttcaacgcttgtgggaacag
tgtccgtcgattatgctgaccacccagtaccgaatgcatcctaatatttccgagatggta
tcgcagataacgtatgacaacaagctagtgaacgatcagtccgtttataatcggccaccg
ccgacatctttctcagaacaactgttcgaaagcgctcctccaccatcccagtctggcgca
tgcaaaaagaaatccgttccgattttatttgtggatgcgggctacaacgacgagatatcg
gccagcggaacgtcattcgttaacatgattgaatcgcattttattgcccgattggtggca
aatattcttcataacggcgacgtatttagtgaccccgcaaaaaagccaaaaccagaggac
attggcattatcaccttctacaacgggcagcgtccacagctggagattgacttgaaagtc
catccacgcgttactgcgagttgccttggctctggtaaaatcgagatcaacagtgtggat
ggctttcaaggccgagaaaaggagattatcatactgtcgtgcgttcgttctgccgacacc
ttctgcggtagaagcacactgggttttaccgatgatcggcaacggttgaatgtggcaatg
tcacgagcgaaaaccgctctgtttgtcgtgggtagtcggcgaatcttccagcactctgca
gtatggcggcaatattttgaatacattcctcaaaaatcgctggaagctgtgtgtcacgcg
ctaccggagccgtgcagcaccaaaccacaaccctgtaaagtttgtcgatcccgtcgtcct
gttgtggtcgaggcagtggagcaatag
DBGET
integrated database retrieval system
