Paramacrobiotus metropolitanus: 129599434
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Entry
129599434 CDS
T09028
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pmeo
Paramacrobiotus metropolitanus
Pathway
pmeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129599434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmeo03019
]
129599434
03041 Spliceosome [BR:
pmeo03041
]
129599434
Messenger RNA biogenesis [BR:
pmeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129599434
Spliceosome [BR:
pmeo03041
]
Complex B
Other components
Prp19-related factors
129599434
Complex C
129599434
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_12
TPR_8
ARM_TT21
TPR_16
TPR_10
FAT
ARM_TT21_C
NRDE-2
Mad3_BUB1_I_2
TPR_1
RPN7
TPR_7
PPR
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
129599434
NCBI-ProteinID:
XP_055353632
LinkDB
All DBs
Position
Unknown
AA seq
863 aa
AA seq
DB search
MAQTPAKNLVIENEDLPFEEECLRNPYALRSWQRYIEHKKKKGIVPTNVIYERALRQLPG
SYKLWYNYLRSRQKQVKGKSPADPALDEVNNVFERSLVFMHKMPRIWIEYCEFLLKQPRI
TRTRRVFDRALRSLPVTQHARIWPIYLRFLKMHNITETALRVYDRYLKLCPDDVEDYIKY
LRSIDRLDECAVQIVKRVINNDRFLSKEGKTKIMYWNDLCDLISSNPKAIKSLNVDDVIR
DGISRFPEQRGRLWNALADYYIRGGQFEKARDIYEEAIDTVTMVRDFTQIFDAYAQFEET
TLSAKMEAVAEEETEGNEEDDVDIELRMARLEMVIERRPVLINSVLLRQNPHNVGEWHKG
VELFKDKPGDVIKTFMEAVKTIEPKKSCNGRFSSIWIAFAQFYDKHGQQDDARIIFEKAL
EVNYDKVEELGDVWCAYAEMELKHDQPKRAIKLLQRATTPPARKAGFYDESETVQNRIYR
SLKIWSFYADLEESFGTYETTKAVYDRIIDLRIATPQIIMNYGVFLEETNHFEEAFKAYE
KGVGLFRWPNVYDIWNTYLSKFVQRYAGKKLERTRDLFEQCLHDCPPKFAKHFYLMYAKL
EEEHGLARHAMKVYERGCTAVLKEEQYEMFNIYIKKAAELYGITSTREIYEKAIESLPDD
QAREMCIRFADLERKLGEIDRARAIYAHCAQICDPRVAAHFWEVWKDFEVRHGNEDTVRE
MLRIKRSVQATYNTQVNFMAAQMMAALGKGVQENQPADDMKRLEVQAAENGAAVPVSATT
APSIIQKSPQKAVSFVRSDETVPGTAGQLMPAANPEEIQLDLDDDDEEDGEQPAQRVVIE
QQNIPSEVFGTLASKRKAPDDEE
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaaccccagccaagaatctcgttatcgagaacgaggatctgccgttcgaagaa
gagtgcctccggaatccgtacgccttgagatcatggcagcggtatattgaacataaaaag
aagaaaggcatcgtgcctactaacgtgatctacgaaagagctctccgacagcttcctggc
agttataaattatggtacaattatctgcgatcgcggcaaaagcaagtgaaggggaagagc
cctgcggatcctgctttagacgaagtcaacaatgttttcgagcgatcgctggtttttatg
cacaaaatgcctcgaatatggatcgaatactgcgagttcctgttaaaacagcccaggatt
acacgaaccagacgagtttttgatcgcgcgttgcgctcgctgccggtgacacagcatgct
cgtatttggccaatttatttgcgatttctcaagatgcacaacattacggaaacggcgctc
cgggtgtacgatcgttacctgaagctctgtccggatgatgtggaagactacatcaaatat
ctgcgtagtatcgaccgtttagacgaatgcgccgttcagatcgtcaaacgggtgatcaac
aatgaccgtttcctgtccaaagaaggcaaaaccaagattatgtactggaatgatctgtgt
gatctcatctcctccaaccccaaggccatcaagagcctcaacgtggacgatgtgatccgc
gacgggatcagtcgcttcccggagcagcgtggtcgtctgtggaacgccttggcggattat
tacattcgtgggggacagtttgagaaggcccgggatatctacgaggaggccattgatacg
gtgacgatggtgcgggatttcacgcagatcttcgacgcgtatgcgcagtttgaggagacc
accttgtcggccaagatggaagcggtagcggaagaggagacggaaggaaacgaagaggat
gatgtggatattgagctgcggatggcccgcttggagatggtcattgagaggcgaccggtt
ctgatcaacagtgttctcctacgtcagaatccacataacgttggagaatggcataaagga
gtcgagttattcaaggacaaacctggggatgtgattaaaacgtttatggaagccgttaaa
accattgaacccaagaaatcatgtaacggacgattttcatccatttggattgcttttgcg
cagttctacgataagcacggccaacaagacgacgctcggattattttcgaaaaagcgctg
gaggtgaattatgacaaggtggaggaactgggcgatgtttggtgtgcatacgcggaaatg
gaactgaaacacgatcaaccaaagcgtgctatcaaattgctgcagcgggccaccactcct
ccagcccggaaagccggtttctatgacgagagtgaaactgtacagaatcgcatctatcga
tccctgaaaatatggtctttttatgccgatttggaggaaagttttgggacttatgagacg
accaaagctgtctacgatcggataattgatctgcgcattgctacgccccagattatcatg
aattacggcgtgtttctggaggaaaccaaccattttgaggaagctttcaaggcctacgaa
aaaggtgtcggattatttcgttggcccaacgtatacgacatttggaatacgtacctcagt
aaattcgtgcagcgctatgccggcaagaaattggagcggacccgcgatctctttgaacag
tgcctgcacgactgcccgccgaaattcgccaagcatttctatctgatgtacgcgaaattg
gaggaggaacatggattggcacggcatgccatgaaggtgtatgagcgcggttgtacggcg
gtgctgaaagaggagcagtatgaaatgttcaacatctacatcaaaaaggccgctgagctg
tacgggattacgtcgacacgggaaatctacgagaaggccattgagagtctcccggatgat
caggcgcgagagatgtgtatccgcttcgcggatttggagcggaagttaggggagattgac
cgggcgcgagcaatttatgcacattgtgcacagatctgtgatccacgcgtggcagcgcat
ttttgggaagtatggaaagatttcgaagtccgtcacggtaatgaagacactgtgcgcgaa
atgctgagaatcaagcggtcggtgcaggcaacctacaacacccaagtgaactttatggcc
gcacaaatgatggctgcgctcggaaaaggcgtgcaagaaaatcaaccagcggatgacatg
aagcggttagaagttcaggccgcagaaaacggcgctgcagtgccggtctcagcgacaaca
gcaccttcaataatccagaaatctccacagaaagccgtttccttcgtacgcagcgatgaa
accgtacccggaacagccggtcaactgatgccggcggccaatcccgaagaaatccaacta
gacttggatgatgacgacgaggaagacggtgaacagccagcgcagcgtgttgtaattgaa
cagcagaatattcccagcgaagtatttggaacgctggcttctaagcggaaagcgccggat
gatgaggagtga
DBGET
integrated database retrieval system
