Parabacteroides merdae: INE87_00344
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Entry
INE87_00344 CDS
T07751
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmer
Parabacteroides merdae
Pathway
pmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
INE87_00344 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmer03019
]
INE87_00344 (rhlE)
Enzymes [BR:
pmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
INE87_00344 (rhlE)
Messenger RNA biogenesis [BR:
pmer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
INE87_00344 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Phage_integrase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QUT47924
LinkDB
All DBs
Position
389172..390452
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AA seq
426 aa
AA seq
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MTAHTYYMTFEQLELIEPIRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTA
AFSIPIIQKIEERISRGRKPGIKALILTPTRELAIQIGESFTAYGRYTHVKHTVIFGGVG
QKPQTDALERGVDVLIATPGRLLDLINQGFIRLDTLEYFVLDEADRMLDMGFIHDIKRIL
PLLPRKRQSLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKIN
LLKNLLEDRSLESVLVFTRTKHGADKVARVLNKSGIGAEAIHGNKGQSARQRALSSFKDH
TLRVLIATDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEV
PYLKDIQKLIGKEVPVAGGHMFETVEVKEAVAEKKKAIKEESKRRNMFGSKRDGSFWRNK
KRTAAK
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
gtgacggctcatacttattatatgacatttgaacaattggaactaatcgagccgatacga
aaggctctcaaaaaagaaaagtacacaactcccactcccatacaagccgaagccattccc
gtagtattggacggatctgatttattaggttgcgcacagaccggaacaggtaagacggca
gctttctccatccctatcatccaaaagatcgaagagcggatttcgaggggacgtaaaccg
ggcatcaaagccttgatcctgactccgacacgcgaattggcgatccagataggtgaaagt
tttacggcatacgggcgttatactcacgtaaaacataccgttattttcggtggcgtgggg
cagaagccgcagacagatgcattggaacggggtgtagacgtattgatcgcaactcccggg
cgtctgctggatttgatcaatcaaggttttattcgcctggacacattggaatattttgtt
ttggacgaagccgaccggatgctggatatgggatttatccatgacatcaaacgcatcctt
cctttactgccccgaaagcgccagtccctgttcttctctgcaacgatgccgccggagatc
gaacgcctagccggaacgatccttcatgaacctgagaaagtggaggtgactcctgtttct
tcaaccgtcgatacgatcgaccagtctgtctattttgttgagaaagtggaaaagatcaac
ctgttgaagaatctgctggaagaccgctcactggaatccgtcttggtttttactcgtacg
aagcacggagccgacaaggttgcccgtgtcctgaacaaatccgggatcggtgcggaagcc
attcatggaaacaaagggcagagtgcccgtcagcgtgccttatccagttttaaggatcat
acgctccgtgtcttgatcgcgaccgatatcgcctcccgcggtatcgatgtcgaccatctt
tcgcatgtcatcaactatgatttgccgaatgtacctgaaacctatgtgcatcgtatcggt
cgtaccggtcgtgccggccgtagcgggatcgctttttccttttgcgatgtggaagaggtt
ccgtatctgaaagatatccagaagctgatcggtaaagaagtgccggttgcaggaggccat
atgttcgagacggtcgaggtaaaggaagcggtagccgagaagaaaaaagcgataaaagaa
gagtccaagcgccggaatatgttcggtagcaaacgggatggcagcttttggcggaataag
aagagaacggctgcaaaataa
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