Parabacteroides merdae: INE87_00364
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Entry
INE87_00364 CDS
T07751
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pmer
Parabacteroides merdae
Pathway
pmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
INE87_00364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmer03019
]
INE87_00364
03400 DNA repair and recombination proteins [BR:
pmer03400
]
INE87_00364
Enzymes [BR:
pmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
INE87_00364
Messenger RNA biogenesis [BR:
pmer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
INE87_00364
DNA repair and recombination proteins [BR:
pmer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
INE87_00364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrD-helicase
Helicase_C
AAA_19
ResIII
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QUT47944
LinkDB
All DBs
Position
421417..424908
Genome browser
AA seq
1163 aa
AA seq
DB search
MKDITFVDLEVTLNTCRVVDIGAVRSDRTPFHENSFDNLLLFLHQVPYIGGHNILKHDLS
YLKPQFEKAGCRQPKIIDTLYLSSLLFPEKLHHQLSKDDKLQADKPNNPVNDSLKSLLLF
EEEQNAFERLDSMLKMIYYGLLHDTDEFGGFFDYIDYAPDILDDLSGSILERFSKDICIS
SPLAELIISYPVELAYGLSLINCWNSSSGIPLWVLHNYPKVGWVMERLRDTPCENNECAY
CRGAFNGKEGLKYFFKYDSFRTYEGEDLQQKAVEAAIEGESLLAVFPTGGGKSITFQLPA
LMSGKRIKGLTVVISPLQSLMKDQVDNLWKNEIMDVVTINGMLDPVERAHAIQRVEEGSV
SILYISPESLRSKTIERLLVGRKVVRFVIDEAHCFSAWGQDFRVDYLYIGDFIRLLQEQK
GGKQAIPVSCFTATAKQNVIQDIKDYFFEKLNIRFKTFCSGSTRKNLKYKVFKVENEDEK
YGLLRSIIEDHDCPAIVYVSRTRTAAKVAMRLQQDGFSAGTFHGKMETRMKTSSQNDFID
NKIRIMVATSAFGMGVDKKNVGLVVHYEISDSLENYVQEAGRAGRDESIEADCYVLFNEE
DLDKHFYLLNQTKLRIKEIQQVWKAIKELTSSRISLSALELARKAGWNENILDVETRVTT
AIAALEEAGYIRRGQNNPCVFADSILAKTAQEAIDRITVSPRFDDTQKEEAIRIIKKLIS
TRSRKHVNGEIPESRIDYISDHLGISRQEVMLVIRLLREENILADACDLTAYIKKGENSN
RSLETVLLYNRLDEYLLSVFTAKEQSFNLKELRKEAEIETGKSISPDKLNRLLNFWSEKN
WIKRIYLDKAHNYVTIARTGSVLDLEELTEGRHLLSDFIIRYLFEKTGQSSELEQSGNIL
VEFSMLELKEAYEKDVRKQLFGHTIRMEDIEDTLLYLSRIEALQIEGGFLVLYNRLQIDR
LVLNNKMQYKQDDYHKLELFYANKIQQINIVGEYVRKMLSGNSDALEFVDDYFQLNYSSF
LQKYFPGKRRDEINRKMTNTKLQRLLGELSETQLEIVKDDRPGSIVVMAGPGSGKTRVLV
HKLAYLLLEEDVKHEQLLMLTFSRAAASEFRRRLWDLIGTAAGYVEIKTFHSYCFDLLGL
QGSLEKSSSVIIDAVGKIDNGEV
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacataacctttgttgatctggaagtaacgttgaacacctgccgggtagtggat
atcggagctgtccgatccgacagaactccttttcatgaaaattcctttgataatctgttg
ctttttttgcatcaggttccttatattggcgggcataatatattaaaacatgacctttct
tatttgaaacctcagtttgagaaagcaggctgccgacaaccgaaaataattgatacgctc
tatctatcctcgttgctgttcccggaaaaactgcatcatcaactgtccaaggatgataag
ttacaggccgataaacccaataacccggtaaacgattcgctgaaatcgttgttgttattc
gaggaagaacaaaacgcttttgaacgcttggatagtatgctgaaaatgatctattacggg
ttattacatgatacggatgagttcggcggcttttttgattacatagattatgcaccggat
attctggatgatttatcgggtagtatccttgagcgtttcagtaaagacatctgtatatct
tctccgcttgctgaattgatcatctcttatccggtggaattggcttatggcctgtctttg
attaattgttggaatagcagttccggcattccgctttgggtattgcataattacccgaag
gtaggatgggtgatggagcgtttgcgggatacgccttgtgaaaataacgaatgtgcttat
tgcagaggagcatttaacggtaaggaaggactgaaatattttttcaaatatgattcgttc
cgtacctatgaaggagaagatctgcagcagaaagcggtggaggctgcgattgaaggagaa
tctcttttggctgtttttccgacaggcggaggaaaatccatcacattccagctcccggct
ttgatgagcggtaaacggataaaaggacttactgtcgttatctctcccttgcaatccctg
atgaaggaccaagtggataacctgtggaaaaatgaaatcatggatgttgttaccatcaac
gggatgttagacccggtggaacgtgcccatgctatccaaagggtggaagaagggtcggtt
tccatcttgtatatatcgccggagtcgcttcgttcgaaaacgatagaacggttgttggtc
gggcggaaagtggttcgtttcgttattgacgaggcacactgtttctcagcttggggacag
gatttccgtgtggattatctatatataggtgatttcatacgtctgttacaggaacaaaaa
ggagggaagcaggcgataccggtgtcctgttttacagccactgccaagcagaatgtaata
caagatatcaaagactattttttcgaaaagctaaatatacgctttaaaacattttgttcg
ggaagtacccgcaaaaatctaaaatacaaagttttcaaggtagaaaatgaagatgaaaaa
tatggactgttacggagtatcattgaagaccatgattgtccggctatagtttatgtttcc
cgtacccgtacggcagccaaagttgccatgcgcttgcagcaggatggtttttcggccggt
acttttcacggaaagatggaaacccggatgaaaacatccagtcagaatgatttcatagac
aataaaatccggataatggtcgctacctctgcttttggaatgggggtcgacaagaaaaat
gtcggtctggtggttcattacgagatatcggattcattggaaaattatgtgcaggaggct
ggtagagccgggcgtgacgaatcaattgaggcggattgttacgttcttttcaacgaagag
gatctggacaagcacttctatttgctaaaccagaccaaactgcgtattaaagagatacag
caggtttggaaagcaattaaagaacttaccagttccaggatttcgttgtcagctcttgaa
cttgcccgtaaagctggttggaatgaaaatattctggacgtggaaacgcgtgtaaccact
gcaatagccgcgcttgaggaggccggttatattcggcgggggcaaaacaatccatgtgtt
tttgctgatagtatccttgcgaaaacagctcaggaggctatcgatagaataacagtctct
ccacgttttgatgacactcaaaaggaagaagcgatacgtatcatcaaaaaattaatttcg
acgagaagccgcaagcatgtaaatggcgagatcccggaatctcgtatcgattatatctcg
gaccatttggggatatcccggcaagaagtgatgctggtcattcgcttgttgcgggaagag
aatattctggcagacgcttgtgacttgacagcttatataaaaaaaggtgaaaacagcaat
cgttcgcttgaaacagtccttctttacaaccgtcttgatgaataccttttatccgttttt
accgcaaaagaacaatctttcaatctgaaagagctacggaaagaagccgagatcgagact
ggaaaaagtatttcgccagataagctaaacagactccttaatttttggtctgaaaagaac
tggatcaaacggatatacttggataaagcgcataattatgtcacgattgcccgtaccgga
tcggtcctcgatctggaagaactgacggaagggaggcatctcttgtctgatttcatcatt
cgttatttgtttgagaaaacaggacagtccagcgagctggaacagagcggaaatattttg
gtcgagttttccatgcttgagctgaaagaggcgtatgagaaggatgtcaggaaacaattg
tttgggcataccattcggatggaagacattgaagatactcttttgtatctttcgcggata
gaagccttacagatcgaaggtggcttcttggtgttatacaaccgattgcagatagacaga
ttggttctgaataataagatgcaatataaacaggatgattatcataaactcgaactgttt
tatgccaataagatccagcagattaatattgtcggtgaatatgtacggaaaatgctttcc
ggtaatagcgatgcattggaatttgttgacgactatttccaactgaattattcgtcattc
ctccaaaaatatttccctggtaaacggagggatgagattaaccggaaaatgacgaatacc
aaacttcagcggttattgggggaattgtccgaaacacaattggagattgtcaaggatgac
cgtcccggttctatagttgtcatggcgggacccggaagtggaaagacacgtgtacttgtt
cataaactggcttacttgctgttggaggaagatgtcaagcacgaacaactcttgatgctg
actttttctcgtgctgctgcgagcgaattcagacgacggttatgggatttgatagggact
gctgctggttatgttgagatcaagactttccactcttattgtttcgacctgttagggctg
caaggttctttagaaaaatcatcttccgtaattatcgatgccgtgggaaaaatagacaat
ggggaagtatag
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