Parabacteroides merdae: INE87_00661
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Entry
INE87_00661 CDS
T07751
Symbol
rlmCD
Name
(GenBank) 23S rRNA (uracil-C(5))-methyltransferase RlmCD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pmer
Parabacteroides merdae
Brite
KEGG Orthology (KO) [BR:
pmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmer03009
]
INE87_00661 (rlmCD)
Enzymes [BR:
pmer01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
INE87_00661 (rlmCD)
Ribosome biogenesis [BR:
pmer03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
INE87_00661 (rlmCD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_25
Methyltransf_15
N6_N4_Mtase
MTS
PrmA
PCMT
Methyltransf_11
UPF0020
Motif
Other DBs
NCBI-ProteinID:
QUT48238
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All DBs
Position
complement(734242..735666)
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AA seq
474 aa
AA seq
DB search
MARNKKQLPLLEKVTITDVAAEGKAIARVNDMVVFVPFVAPGDVIDIQLTRKKHSYAEGK
AVFFHEYSPRRAEPFCEHFGVCGGCKWQHLPYEEQIRYKHKQVIDNLTRIGKIEMEEILP
IKGSKHTTFYRNKLEFTFSNKKWLTEEEVKTGAKFDCMDAVGFHIPGMFDKVLDIHKCWL
QNDISNRIRQAVKEYCLTHKGYPFFDLRNQEGFVRTLMIRTASTGDLMVVLVFFYEDVER
REALLSYVAEQFPEITSLMYVINEKCNDTITDQDVLVFRGKDHIIEEMEGLQFKVGPKSF
YQTNSEQAYELYKVAREFAGLTGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIED
AKVNSSLNKIENTLFYAGDMKDILTQDFINQHGRPDVIITDPPRAGMHDDVINTILFAEP
ERIVYVSCNPATQARDLSLLSVKYAVKKVQPVDMFPHTHHVENVVLLEKLKVKN
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
ttggcaagaaataagaagcagttgcctttattggaaaaggtaacaataacagatgtagcc
gcagaaggaaaggctatcgcacgcgtaaatgacatggtcgtattcgtaccttttgttgcg
cccggagatgtcatagacatacaattgacacgtaagaaacatagttatgcggagggaaaa
gctgtatttttccatgaatattcgccccgacgtgcagagccgttctgtgaacatttcggt
gtatgcggcggctgtaaatggcaacatctgccctatgaggaacagattcgctacaaacac
aagcaggtgatcgacaacctgacccggatcggtaagatcgaaatggaagaaatactcccg
atcaagggttccaaacatacgactttctatcgtaacaaacttgaatttacattctctaac
aagaaatggttgacggaagaggaagtgaaaaccggagccaagttcgattgtatggatgcg
gtcggtttccatattccgggaatgttcgacaaggtgctcgacattcacaaatgctggttg
cagaacgacatatcaaaccgcatccgtcaggcagtcaaagaatactgcctgacacacaaa
ggctatccgttcttcgaccttcgcaatcaggaaggatttgtgcgtacattaatgatccgt
acggcttcaacgggcgatctgatggtagtgttggtatttttctacgaagatgtggaacgc
cgcgaagcgcttctctcctatgtggctgaacagttcccggagatcacttcactgatgtac
gtcatcaacgaaaaatgcaatgatacgattaccgaccaggacgttcttgtgttccgtgga
aaagaccatatcatcgaggagatggaaggacttcagttcaaagtagggccgaaatcgttc
tatcagaccaacagtgaacaggcttacgaactctataaagttgcccgcgagtttgccgga
ctgaccggaaacgaaatggtttatgacttgtacaccggaaccggtacgatcgccaacttc
gtctcccgccaggcaaagaaagtgatcggtatcgaatatgtgcccgaagcgatcgaagat
gccaaagtgaactcctcgttgaataagatcgagaatacattgttctacgccggcgacatg
aaggatatcctgacacaggatttcatcaaccaacacggccgtccggatgttattatcaca
gacccgccccgtgctggtatgcatgacgatgtgatcaacacgattctttttgcggaaccg
gaacgtatcgtttacgtgagctgtaaccccgcgacacaggcacgcgacctgagcctgctt
tcggtaaagtatgccgttaaaaaggtacagccggtagatatgttcccacatacgcatcat
gtagaaaatgtcgtcctcctggagaaattaaaagttaagaattaa
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