Parabacteroides merdae: INE87_01832
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Entry
INE87_01832 CDS
T07751
Name
(GenBank) RNA pseudouridylate synthase
KO
K06177
tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:
5.4.99.28
5.4.99.29
]
Organism
pmer
Parabacteroides merdae
Brite
KEGG Orthology (KO) [BR:
pmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmer03009
]
INE87_01832
03016 Transfer RNA biogenesis [BR:
pmer03016
]
INE87_01832
Enzymes [BR:
pmer01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.28 tRNA pseudouridine32 synthase
INE87_01832
5.4.99.29 23S rRNA pseudouridine746 synthase
INE87_01832
Ribosome biogenesis [BR:
pmer03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
INE87_01832
Transfer RNA biogenesis [BR:
pmer03016
]
Prokaryotic type
tRNA modification factors
Psudouridine synthases
INE87_01832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
LRS4
Cep57_CLD_2
DUF3740
zf-C4H2
Motif
Other DBs
NCBI-ProteinID:
QUT49381
LinkDB
All DBs
Position
complement(2130889..2132523)
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AA seq
544 aa
AA seq
DB search
MNKLHYFADSISLLSLPEKFTYPFHYTPHPLCVAAAGEVGRYLSTKGEWQEELRKGKMFG
VLIVRTGEGEVGYLAAFSGILAGKNRHTYFVPPVYDVQEPDGFFRIEEEQISGINRRIEE
LQADVRYKDCKQRLTDETILAGQVLDDIRERMKAAKVERDRLRSTVTRVDSEQLIRESQF
QKAELKRQKQYWKDHLASLQTEVEVFETEIERLKAERKTRSAALQQWLFKQFRMLNARGE
ERDLCNLFKDTVQKTPPAGAGECAAPKLLQYAYRNGWQPLAMAEFWWGDSPKNEIRRHGY
YYPACKGKCGPILKHMLQGLHVEENPLETDMHRGTELEIMYEDEWLSVVNKPAGMLSVPG
KSDIDSVYGRVRRMYPEATGPMIVHRLDMATSGLILIAKTKEVHQNLQAQFKNRTVCKRY
VAWLDGIVEKKEGHIELPLRPDPEDRPRQVVDAVHGKPAVTDYTVLHYDSGRTFISFIPK
TGRTHQLRVHSTHPLGLNAPIVGDELYGRKADRLYLHAEYLGFIHPVSGVYMEIEKESGF
DDLL
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaacttcactattttgcagattctatttctcttctctctctgccggaaaagttt
acctatccgttccattataccccgcatcccctttgtgtggcggcagcgggcgaggtcggg
cgctatttgtcgacaaagggagaatggcaggaggaactgcggaaagggaagatgtttggc
gttttgattgtccgtacaggagagggggaagtcggctatctggcagccttctctggcatc
ctggcagggaagaatcgacacacttatttcgtgcctccggtttatgacgtgcaagagcca
gatggcttttttagaatcgaagaagaacagatatcgggaatcaacaggcggatcgaggag
ttgcaggcagatgtgcgatataaagattgcaagcaacggttgactgatgagacgatcctt
gccggacaggttttggatgatatacgggaacggatgaaagcggctaaggttgaacgtgac
cggttgcgttcgaccgtcacacgggtagattcggagcagctgatccgggaaagccagttc
cagaaagcggaactgaaacggcagaaacaatattggaaagatcaccttgcctccctccaa
acggaagtagaagtgttcgagacggaaatcgaacgcctcaaagcagaacgcaagacccgt
tcggctgcccttcaacaatggcttttcaaacaattccgcatgttgaacgcccgcggagag
gaacgggatttgtgcaacttgtttaaagataccgtccaaaagacgccaccggcaggtgca
ggtgagtgtgcggctcccaagcttctgcaatatgcctaccggaacggttggcaacctctt
gctatggctgaattctggtggggagattctccgaaaaacgagatccgccgtcatggatat
tattatccggcctgcaaagggaaatgcggaccgatcctgaagcatatgctacaaggccta
cacgtcgaggaaaacccgttggaaacggatatgcaccggggtacggagttggaaatcatg
tatgaagacgaatggttgtcggtagtgaacaaaccggccggcatgttgtcagtccccgga
aaatcggatatcgattccgtctacgggcgagtgcgacggatgtatcccgaagcgaccgga
ccgatgatcgtgcaccgccttgacatggcgacctccggcctgatccttatagccaagacg
aaagaagtgcaccagaacttgcaggcacagttcaagaaccggacggtgtgtaaacgatat
gttgcttggttggatggcattgtggagaaaaaagaaggtcatattgaactccccctccgc
ccggatccggaagaccggccgcggcaggtggtcgatgcggttcacggaaaacctgccgtg
actgattatactgtgctgcattatgattcggggcgtacttttatttctttcataccgaaa
accgggcgcacacatcagttgcgtgtccattcgacccatccgcttggcttgaatgccccg
atagtaggggatgagttgtatggcaggaaggcagaccgcttgtatctgcatgccgaatac
ttggggtttattcatcctgtctctggagtgtatatggaaatagaaaaggaatccggcttt
gatgatcttttatag
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integrated database retrieval system
