Parabacteroides merdae: INE87_01914
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Entry
INE87_01914 CDS
T07751
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmer
Parabacteroides merdae
Pathway
pmer03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmer00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
INE87_01914 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmer03021
]
INE87_01914 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmer03400
]
INE87_01914 (rpoC)
Enzymes [BR:
pmer01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
INE87_01914 (rpoC)
Transcription machinery [BR:
pmer03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
INE87_01914 (rpoC)
DNA repair and recombination proteins [BR:
pmer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
INE87_01914 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QUT49452
LinkDB
All DBs
Position
complement(2226172..2230458)
Genome browser
AA seq
1428 aa
AA seq
DB search
MAFRKENKIKSNFSKITIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
IKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIHLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDSIIYYERYVVIQPGCVDTIAELDLLSEEEYLQILDNLPKENQMLEDTD
PNKFIAKIGAEAIYDLLARLDLDSLSYELRHRASTDGSQQRKNEALKRLQVVESFRASRG
RNKPEWMIVKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIKAPEV
ILRNEKRMLQEAVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVDYS
ARSVIVVGPELKMHECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIVDRKEPVVWD
ILEYVMKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFNADFDGDQMAVHL
PLGNEAVLEAQMLMLASHNILNPANGAPITVPSQDMVLGLYYITKMRKGTQGEGLVFYGP
EEATIAYNEKKVDIHAPIKVYVNDIDKEGNPVKKMVETSVGRLMVNEFVPEEVGYINEVL
GKKALRDIIGKVIKACGVARTAQFLDDIKNLGYYMAFKGGLSFNLADVLIPPEKEALVKE
GYDEVEQIMNNYNMGFITNNERYNQIIDTWTHVNSKLSDTLMKQLTADNDGFNSIYMMMD
SGARGSKEQIRQLSGMRGLMAKPQKSGAEGGQIIENPILSNFKEGLSVLEYFISTHGARK
GLADTALKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLVCTELKNNDEVIASLGERILG
RVSVHDVIHPLTGEVIVRAGEEIREDAAKKIEDSPIESVEIRSVLTCESKKGVCAKCYGR
NLATNQMVQKGEVVGVIAAQSIGEPGTQLTLRTFHVGGIASNVATENSITSKYDGVLEIE
ELRAVDSEENGKKFQVVVSRLAELRIVDPTTKIVLLAHNIPYGSKLFFKNGDTIKKGDVI
IEWDPFNAVIVSEVSGKIEFESLVENVTYNVESDETTGLKEKIIIESKDKTKAPAAHIVD
ENGNYLKNYSLPLGAHVVKDEGDMVKAGEVLVKIPRAVSKAGDITGGLPRVTELFEARNP
SNPAVVSEIDGEVGFGKIKRGNREITVTSKLGEVKKYMVPLSKQLLVQENDYIRAGMPLS
DGATTPSDILAIMGPTAVQEYIVNEIQDVYRLQGVKINDKHFEVIVRQMMRKVEIIDPGD
TRFLEQQVVDKLEVMDENDRIWGKKVVTDPGDSQTLQAGQIVTVRKLRDENSMLKRRDLK
LVEVRDAVPATANQILQGITRAALQTNSFMSAASFQETTKVLNEAAINGKVDRLEGLKEN
VICGHLIPAGTGQRDFDKLVVGAKDEFERIFANRKNVVDFNTMDRDDE
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggcctttagaaaagaaaacaagataaagagtaacttttcaaaaataaccatcggtctg
gcttcccctgaagagattcttgagaactctagtggtgaagttttaaaaccggaaacgatt
aattatcgtacgtacaaacctgagcgtgacggtcttttctgtgagcgtattttcggtcct
atcaaggactatgaatgccattgcggtaaatacaagcgtattcgttataaaggtattgtc
tgcgatcgttgcggggtagaagttacagagaaaaaagtacgtcgtgaacgtatgggacac
attcatttggttgtacctgttgctcatatctggtattttcgttccctgcccaataaaatc
ggttacttgttaggcttgccgaccaagaaactggattctattatctattacgaacgttat
gtcgtgattcagccgggttgtgtagacactattgctgaattggacttgctttcggaagaa
gaatatttgcagattctggataacctgccaaaggaaaaccagatgttggaagatacggat
ccgaataagttcatcgcaaagatcggtgctgaagccatctatgatttgttggctcgtctg
gacttagattctttgtcttacgaattgcgccatcgtgcaagcacagacggttcgcaacag
cgtaagaacgaagcattgaaacgtttacaggttgttgagtccttccgtgcatccagaggg
cgtaacaaaccggaatggatgatcgtgaaggttgtacctgttatccctccagaactgcgt
ccgttggttccgttggatggtggccgtttcgctacttccgatttgaatgatttgtatcgt
cgtgttattatccgtaataaccgtctgaaacgattaatcgatattaaagctcccgaagtt
attttacgtaatgaaaaacgtatgcttcaggaagctgtggattctttgtttgataactct
cgtaaatcgagtgctgttaagacagatgctaaccgtccgttgaagtctctctccgacagt
ttgaaaggtaaacaaggtcgtttccgtcagaacctgttgggtaaacgtgttgactattcg
gcccgttcggttatcgttgtaggtcctgaattgaagatgcatgaatgtggtctgccaaag
aatatggcagccgaactttataagcctttcgtgatccgtaaattgattgaacgcggtatc
gtaaaaacggttaagtctgctaagaagatcgtcgaccgtaaggagccggtggtttgggat
attttggaatacgtaatgaaaggacatccggtattgctgaaccgtgcaccgacactgcac
cgtttgggtattcaggcattccagccaaagttgatcgaaggtaaagctattcagttgcac
ccgttggcatgtacggcattcaacgccgacttcgacggtgaccagatggctgttcacttg
cctttaggaaacgaggctgtattggaagcacagatgctgatgcttgcttctcataacatt
ctgaatccggctaacggtgcacctattactgttccttctcaggatatggtgttaggtttg
tactacataaccaaaatgcgcaagggaacacaaggtgaaggtcttgttttctatgggccg
gaagaagcaacgatcgcatataatgaaaagaaagtggatatccatgctccgatcaaagta
tatgtgaacgacatagacaaggaaggtaatccggttaagaaaatggtcgaaacttctgtc
gggcgtttgatggtcaatgaatttgttccggaagaagtcggttatattaatgaagtattg
ggtaaaaaagctctccgtgatatcatcggtaaggtgatcaaggcttgtggtgttgcccgt
acggctcagttcttggatgatatcaagaatctgggttattatatggctttcaaaggtggt
ttgtccttcaacttggctgacgttctgatcccacctgaaaaagaggcgttggtgaaagaa
ggttatgacgaagttgaacagattatgaacaactataacatggggttcattaccaacaac
gaacgttataaccagattattgatacttggacacatgttaacagcaagttgtccgataca
ttgatgaagcagttgactgctgataatgatggtttcaactctatctatatgatgatggat
tctggagcccgtggttctaaagaacagattcgtcagttgtccggcatgcgtggtttgatg
gcaaaaccgcagaaaagtggtgcagaaggcggtcagattattgaaaacccgatcctttct
aactttaaagaaggtctgtctgtgttggagtattttatctctactcacggtgctcgtaaa
ggtttggccgatacagctttgaagactgctgatgctggttatttgactcgtcgtctggtt
gacgtatcgcatgatgtgatcattaatgaagaagattgtggtacgttgcgtggtttggtt
tgtacggaattgaagaacaatgatgaagtgatcgctagtctgggtgaacgtatcttgggg
cgtgtttccgttcatgatgttattcatccgttgacaggagaagtaatcgttcgggccggt
gaagaaattcgtgaagatgcggctaaaaagatcgaagattctccgatcgaaagtgttgaa
atccgctctgtattgacttgtgaatccaagaaaggtgtttgtgcgaaatgttatggccgt
aatctggctacgaaccagatggttcagaaaggtgaggttgtgggtgttatcgcagcacag
tcaatcggtgaaccgggtactcagctgacactgcgtacattccacgtcggtggtatcgca
tctaacgtggcaacagaaaacagtatcacttctaaatatgacggtgttctggaaatcgaa
gaacttcgtgctgtggatagcgaagaaaacggtaagaaattccaggttgttgtcagccgt
ttggctgaactccgtattgtcgatccgacaacgaagatcgtattactggctcacaatatt
ccttatggttccaaattgttcttcaagaatggagatacaatcaagaagggggatgttatt
atcgaatgggacccgttcaacgccgttatcgtatcggaagtttccggtaagatcgaattc
gaaagtttggttgaaaatgttacttacaatgttgaaagtgacgaaacgactggtttgaaa
gaaaagatcattatcgaatctaaagataagacaaaagctccggctgcacacatcgtggat
gaaaacggaaactatctgaagaattattcattaccgttgggtgcacacgttgtaaaagac
gagggcgatatggttaaggcgggtgaagtcttggtcaagattccgcgtgcagtaagtaaa
gccggtgatattactggtggtttgcctcgtgtaacggaattgtttgaggctcgtaacccg
tctaacccggctgtcgtttctgaaatcgatggtgaagttggtttcggcaagatcaagcgt
ggtaaccgtgaaattactgttacatccaaattgggtgaagtaaagaaatatatggtgcct
ctgtccaagcaactgcttgttcaggaaaatgactacattcgtgcaggtatgcctctgtct
gatggtgcgactactccgtctgatatcctggcaatcatgggaccgacggctgttcaggaa
tatatcgtaaatgaaatccaggacgtataccgtctgcagggtgtaaaaattaacgataag
catttcgaggtaatcgttcgtcagatgatgcgtaaggttgaaatcatcgatccgggagat
actcgcttcttggaacagcaggtggttgataagctggaggtaatggatgaaaacgatcgt
atctggggcaagaaggttgtgacggatccgggagattctcagacattgcaggcaggtcag
atcgtgactgtccgtaagttgagagatgagaatagtatgctgaaacgtcgtgacttgaaa
ttggttgaagtccgtgatgcagttcctgctacggctaaccagattcttcagggtattact
cgtgccgctttgcagacaaacagctttatgtctgccgcatctttccaggaaacaactaaa
gtgctgaatgaagctgctatcaatggaaaagtggatcgtctggaaggtttgaaagaaaac
gttatctgcggtcatttgattcctgccggtacaggccagcgtgatttcgacaaattggtt
gtcggtgctaaagatgagttcgaacgtatctttgcaaatcgtaagaatgtcgtagatttc
aatactatggacagagacgatgagtaa
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