Parabacteroides merdae: INE87_01915
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Entry
INE87_01915 CDS
T07751
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pmer
Parabacteroides merdae
Pathway
pmer03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmer00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
INE87_01915 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmer03021
]
INE87_01915 (rpoB)
03400 DNA repair and recombination proteins [BR:
pmer03400
]
INE87_01915 (rpoB)
Enzymes [BR:
pmer01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
INE87_01915 (rpoB)
Transcription machinery [BR:
pmer03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
INE87_01915 (rpoB)
DNA repair and recombination proteins [BR:
pmer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
INE87_01915 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF7210
Motif
Other DBs
NCBI-ProteinID:
QUT49453
LinkDB
All DBs
Position
complement(2230532..2234344)
Genome browser
AA seq
1270 aa
AA seq
DB search
MSSTAENQRVNFASIKNQFPYPDFLEVQLKSFQDFLQLDTPPEKRKKEGLYKVFAENFPI
ADTRNNFVLEFLDYYIDPPRYTIDECIARGLTYSVPLKAKLKLYCTDPDHEDFDTVIQDV
YLGPIPYMTERGTFVINGAERVVVSQLHRSPGVFFGQSTHANGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGFESDKDILEIFNLAEEVKVSKANLKKLIGRK
LAARVLKTWVEDFVDEDTGEVVSIERNDVIIDRESVLDSDNIEAILESGTQNILLHREDQ
NLSDYAIIYNTLQKDPSNSEKEAVLYIYRQLRNAEPADEASAREVIQNLFFSEKRYDLGE
VGRYRINKKLNLTTSDDIKVLTKEDIIEIIKYLIELINSKAIVDDIDHLSNRRVRTVGEQ
LYNQFGIGLARMSRTVRERMNVRDNEVFTPIDLINAKTISSVVNSFFGTNALSQFMDQTN
PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYA
KINDLGFISTPYRKVVDGKVDFSEEGLQYYTAEEEEELTIAQGNAPLDDNGKFVRDRVKA
RFEADFPVVPPTEIDLMDVAPQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRTD
APIVGTGIEAQVARDSRTQIMAEREGEVVFVDATCIKIKYDRSEDEEFVSFEDAVKTYNI
PKWRKTNQSTTVDLRPICHRGQRVKAGDILTEGYSTQNGELALGRNVKVAYMPWKGYNYE
DAIVLNERMVREDFFTSVHVDEYILEVRETKRGMEELTSDIPNVSEEATKDLDERGIVRV
GARIEPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKATPSLRGVVIETAL
FSKAIKKRKSRLTDKAILPKLDEEYEMKMADLKNLLVDKLLVLTNGKVSQGVKDYMNTEI
IAKGVKFSRKALEELDYNSIQVSKWTADADKNELIKQVILNYLKKYKELDAELRRKKFDL
TIGDELPTGIVQMAKVYIAKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFLEDGTPVDI
CLNPLGVPSRMNLGQIFEAVLGWAGRTMGVKFATPIFDGATLDDMNEWTDKAGLPRYGKS
YLYDGGTGERFDQPATVGVTYFLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEAFGAAHVLQEILTIKSDDVVGRSKAYEAIVKGDPMPQPGIPESLNVLLHEL
RGLGLSFTLD
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaacagctgaaaaccaaagagttaattttgcttcgatcaaaaatcagttccca
tatccggactttctcgaagtacaattgaagtcattccaagactttcttcaacttgacaca
cctcctgaaaagagaaaaaaggagggattgtataaggtatttgccgagaattttccgata
gcagatacgcgtaacaattttgtgttggagttcttagattactatatagatccgcctcgc
tatacgattgacgaatgtattgctcgcgggttaacctatagtgtgcctttaaaagcgaag
ttaaaactgtattgtacagaccctgatcacgaggatttcgatacagtgatacaggacgta
tatctgggcccgattccgtatatgacggaaaggggcactttcgtgataaatggtgcggag
cgtgttgtggtttcacaattgcaccgttcaccgggtgtattctttggacaaagtacacat
gccaatggtacgaagttgtattcagcgcgtatcattccttttaaaggttcctggatcgag
tttgcaactgacatcaacaatgtgatgtatgcttacatcgaccgtaaaaagaaattacct
gtaacaacccttttaagagctattggttttgaaagcgataaagacattctcgagatcttt
aatctggctgaagaagtaaaagtttcgaaagctaacctgaagaagctgatcggtcgtaaa
ctggctgctcgtgttttgaagacttgggtggaagatttcgtagatgaagataccggtgag
gttgtttctattgaacgtaatgacgttatcatcgaccgtgagtcggttctcgatagcgac
aatattgaggctattctggaatctggcacgcaaaacattctattacatcgtgaggaccag
aatctttcagattatgctatcatctataatacgcttcagaaagaccctagtaactctgaa
aaggaagctgtcctgtatatttatcgtcagttgcgaaatgcagaacctgcagatgaagca
agtgcccgtgaagttattcagaacctgttcttctctgaaaagcgttatgatttaggtgaa
gttggccgttacagaattaataagaagttgaaccttactaccagcgatgatattaaggtt
ttgacaaaagaagatataatcgagatcatcaagtatctgattgagttgatcaactcgaaa
gcgatcgttgatgatatcgaccatttgagcaaccgtcgtgtgcgtacagtgggcgaacag
ctgtacaaccagttcggtattggtttggctcgtatgtctcgtacggttcgtgaacgtatg
aatgtacgcgataatgaagtgtttactccgattgatttgattaacgcgaagactatttct
tctgtcgttaactcattcttcggaacgaatgctttgtctcagtttatggaccagacaaat
ccactggctgaaattacgcataaacgtcgtttgtctgcattgggaccgggtggtctgtct
cgtgaacgtgctggatttgaggttcgtgacgtacactatacgcattatggtcgtctttgt
ccaattgaaactcctgagggaccgaacatcggtttgatctcttctttgtgtgtatatgct
aagattaacgatcttggttttatctctactccgtaccgtaaggttgttgatggtaaggtg
gacttttctgaggaaggtttacaatattatactgcagaagaagaagaagaattgacgatt
gcccaaggaaatgctccattggatgataacggcaagtttgttcgtgatagagtgaaagct
cgttttgaagctgatttcccggtcgtgcctcctacggagatcgatttgatggacgttgct
ccacagcagattgcttctattgcggcttctttgattccgttcttggaacatgacgatgct
aaccgtgcattgatgggatctaacatgatgcgccaggctgttcctttgctgcgtacggat
gctccaatcgttggtacaggtatcgaagcgcaggttgctcgtgattcacgtacccagatc
atggctgaacgtgagggagaagttgtatttgtggatgcaacttgtatcaagatcaaatat
gaccgctcggaagatgaagaattcgtaagtttcgaagatgcggttaagacatacaatatt
ccgaagtggcgtaagactaaccaaagtacgactgtcgatctgcgtccgatctgtcatcgt
ggtcagcgtgtgaaggctggcgatatcctgacggaaggttattctactcagaatggtgag
ttggccttgggacgtaacgtgaaagtggcatatatgccgtggaagggttacaactatgag
gatgctatcgttttgaacgaacgtatggtccgtgaagacttctttacttcagttcacgtt
gacgaatacattttggaggttcgtgaaacgaaacgtggtatggaagagttgacttccgat
atcccgaatgtcagcgaagaagcgactaaggatttggatgaaagaggtattgtccgtgtg
ggtgctcgtattgaaccgggtgatattttaattggtaagattactccgaagggtgaatct
gatccttctccagaggaaaaattgcttcgtgcaattttcggcgataaggctggtgatgtg
aaagatgcttctttgaaagcaaccccgtctcttcgtggtgtagttattgaaactgcttta
ttctcgaaagccatcaagaagcgtaagtccagactgacagacaaggctattcttcctaaa
ttggatgaggaatacgaaatgaagatggctgacctgaagaacttgttggttgataaactg
ttggttttgactaatggtaaggtttctcagggagttaaagactatatgaatacagagatt
attgcgaagggagttaagttctctcgcaaggctctggaagaattggattataattctatc
caagtaagtaaatggactgccgatgctgataagaacgaacttatcaagcaggtgattctg
aattatttgaagaaatataaggaactggatgctgagttgagacgtaagaaatttgatctt
acgatcggcgatgaactgcctactggtattgttcagatggctaaggtttacattgctaag
aaacgtaagatccaggttggggataagatggccggtcgtcatggtaacaagggtattgtt
tccaagatcgtccgtcaggaagatatgccattccttgaagatggaactccggttgatatc
tgtttgaatccgctgggtgtaccttctcgtatgaacttaggacagatttttgaagctgtg
ttaggttgggcaggccggacgatgggggttaaatttgctactcctatctttgatggtgca
acattagatgatatgaatgaatggacggacaaagccggattaccccgttacggtaagagt
tacttgtatgacggtggaacaggtgaacgttttgaccagccggctacagtgggtgttact
tacttcctgaagttgggtcacatggttgacgataagatgcatgctcgttcaatcggtccg
tactctcttattactcagcagcctctgggtggtaaggcacagtttggtggtcagcgtttc
ggagagatggaagtttgggcactggaagctttcggtgctgcacatgttcttcaggaaatt
cttacgatcaaatctgacgacgttgttggacgttctaaggcttacgaagcaattgtgaaa
ggtgatccgatgccacaaccgggtatccctgaatctctgaacgtattgctgcacgagctg
agaggtcttggtttaagctttactctggattaa
DBGET
integrated database retrieval system
