Parabacteroides merdae: INE87_02083
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Entry
INE87_02083 CDS
T07751
Symbol
hup_4
Name
(GenBank) DNA-binding protein HU
KO
K03530
DNA-binding protein HU-beta
Organism
pmer
Parabacteroides merdae
Brite
KEGG Orthology (KO) [BR:
pmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmer03032
]
INE87_02083 (hup_4)
03036 Chromosome and associated proteins [BR:
pmer03036
]
INE87_02083 (hup_4)
03400 DNA repair and recombination proteins [BR:
pmer03400
]
INE87_02083 (hup_4)
DNA replication proteins [BR:
pmer03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
INE87_02083 (hup_4)
Chromosome and associated proteins [BR:
pmer03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
INE87_02083 (hup_4)
DNA repair and recombination proteins [BR:
pmer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
INE87_02083 (hup_4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
Nup214_FG
DUF2267
HU-DNA_bdg
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
QUT49605
LinkDB
All DBs
Position
2424503..2424775
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AA seq
90 aa
AA seq
DB search
MNKTEFINAVAEKSGLSKVDAKKAVEAFVETVSSELKEGGKVALLGFGSFSVAEKSARKG
VNPKTKQPIEIPARKSVKFKAGAELTEIIK
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaacagaatttatcaatgctgtagcggaaaaatccggtttaagcaaagttgat
gcaaagaaagctgtagaagcttttgttgaaacagtttccagtgaattaaaagaaggtggc
aaagtggcccttttaggttttggttctttctctgttgctgaaaaatctgcacgcaaaggt
gttaacccgaagactaaacaaccaatcgaaatcccggcacgcaaatcagttaaattcaaa
gctggcgccgaattgacagaaatcatcaagtaa
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