Paraglaciecola mesophila: FX988_00040
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Entry
FX988_00040 CDS
T06389
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pmes
Paraglaciecola mesophila
Pathway
pmes03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FX988_00040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmes03400
]
FX988_00040
Enzymes [BR:
pmes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FX988_00040
DNA repair and recombination proteins [BR:
pmes03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FX988_00040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_11
PDDEXK_1
ResIII
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QHJ09832
UniProt:
A0A857JF16
LinkDB
All DBs
Position
42279..46217
Genome browser
AA seq
1312 aa
AA seq
DB search
MIPLNTKTFPLTGASLIEASAGTGKTYTIVNLYLRLLLGDECTPLSVDKILVVTFTNAAT
AELKQRIRQRLQRAYFDFYAHKSEDEFTQYLIERSENIELDCHRLLLAIKQMDDASVFTI
HGFCQRMLSLHAFESGAMYEQRLVLDESQWLKLAVEDYWRSHIVQLPRQILNELLCIWQS
PQALQSALRSLLYRHVTPLQKADIRASHQCVDDYISALQETKRWWLDNNVAEQIIDADLK
ANTKLGKADYIGKMQAFCLSDDSRADFDKDLWQVFSPAKVTGAMKKTSKSLAHLDFSRFE
TLGYLQQQCHEQLLLAYSLDALEHISRNLANNKQRLQLLSPDDLLSCLHRALTAQAQSSG
QASPEPQAAAQESLARAIQESYPAALIDEFQDTDPIQFDIFRIIYTQQFSDITPCWVAIG
DPKQAIYAFRGADIHTYIAAKDLVDVERQFTLGTNWRSQPSLVEGVNTLFAQSEAGFLFK
DSIPFQAVASVAQEAGLQILGQNHNSLDVHHLTSENTQPIGWGEAQAAMAQQCAWRIAQF
IHQGETGEAKIMQRGIMPGDCCVLVRDRNEADTIKQALAELGVDSMFLARKSVFASQTAV
DLYAIVQALANPSNDRYLRAAIASELFCYDAAALDALFSEEWQWQKLVEQFAYWHQLWQR
HGLMMALNILMRHFSIAQRLVERYQDGQRRLTDLRHLVELLQVQSQLMSGESQLLHWFQA
HLAEPDNDNEGQQIRLETEQNLVQIITQHTSKGLEYPLVFIPFASRCREMKEAIYHSDTD
GLVIDFLGAEENLALADHERLAEDIRLLYVALTRAVHYCFIGLWNNSHPQRKKESQLMQT
ALGRILFDQGTSINDQVIAQRLNDLSQSIDLGYQGFRAEEAQRNVTELKQLLLTKSTNGL
GVNAQQSGVAGKNPTDGIKASGDESEKIQQGSHVALQAAQLPKPVTRRWRLTSYSAISSQ
QHHEFVAPGQDEGVDKLDLIASLVSPKSDVNENISPVVSQTQNVPTDDLIENNNNSLSLM
SDTDMSLLGADDEVLIEQEVLDQFTFVKGAQAGSFLHGVLESIDFTNPVNLQDVIVEKGT
WYGIEEKWFEAVELWILDVLQTKLSSQIGDDDSHLDALCLGILSKDQVLVEMEFYLPLVD
VKAQTFNHILNQHIPQRQHHYQFEQLNGMLKGFIDLTLQYQGKFYVLDYKSNYLGADFAD
YHGEAMASAMQEHDYYLQAILYTVALHRWLQNNKSDYAYAEHIGGAFYTFLRGMHSEKPG
NGVFYLLPKQALIDDLDALFDGRYQPTSQSTSSGTKRSGDDAPSGQGQLDLW
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgatcccgttaaacaccaagacctttccactgaccggtgcctctcttatcgaagccagt
gcaggaaccggaaaaacctacaccatagtcaacttgtatttacgtttgctgttaggggat
gaatgcacgcctttaagtgttgacaaaatcttagtggtgactttcaccaacgccgccaca
gctgagcttaaacagcgaattcgtcaacgactgcaacgggcgtattttgatttttatgcg
cacaagagtgaagacgaatttacccaatatttaatcgaacgtagtgaaaatattgagctt
gattgccaccgcttgctattggcgattaaacaaatggacgacgcctcagtatttactata
catggcttttgtcaacgaatgctcagcttacatgcctttgaaagcggggcaatgtatgaa
caacgtttggtgcttgatgagtctcaatggttgaaactggcggttgaggattactggcgc
agccatattgttcagttaccgcggcaaatattgaacgagctactgtgtatttggcaaagc
cctcaggcgttacaatctgccttacgttctttgctgtaccgtcacgttactcctttgcaa
aaggcagatatacgcgccagccatcaatgtgttgatgactatattagtgccttacaagaa
accaagcgctggtggcttgataataacgtggccgagcagataattgatgccgatttaaaa
gccaacaccaagcttggaaaagcagattatattggcaaaatgcaggcgttttgtctcagc
gacgatagccgtgctgattttgataaagacctatggcaagtgtttagccctgcgaaagtg
accggcgccatgaagaaaacttctaagagcttagcgcatctagattttagccgctttgaa
accttgggctacttacaacagcaatgtcatgaacaacttttactggcctacagtttggat
gcactagagcatatcagccgaaaccttgctaataataaacaacgtttgcagttgttatca
ccagatgatttgcttagctgtttgcatcgcgcattgacggctcaagctcaatcaagtggt
caagcaagcccggaacctcaagctgcagcgcaggagtctttagcaagagcaatacaagag
agttatcccgcggcgctgattgacgaatttcaagatacagacccaatacagtttgatatt
tttcgtattatttatacgcagcaatttagtgatatcacgccatgttgggtcgctattggc
gatcctaaacaagccatttatgcgtttcgcggcgcagatattcatacctatattgccgct
aaagacttggtggatgttgagcgccaatttaccctagggaccaactggcgttcacagcca
agtttagtggagggggtgaataccttatttgcgcaaagtgaggcggggtttttgtttaaa
gacagtattccgtttcaagcagtggcaagtgttgcgcaagaagcgggtttgcagatcctt
gggcaaaatcataacagcttagatgtgcaccacttaacaagtgaaaacacccagccaatt
ggctggggagaggcccaagctgccatggcacaacaatgtgcctggcgtattgcgcaattt
attcatcaaggcgaaacgggtgaagctaagataatgcaacgcggcattatgccaggggac
tgctgcgtcttggtacgagacagaaatgaagctgacaccattaaacaagccttagctgag
cttggggtagacagcatgtttttggcgcgtaaaagtgtatttgccagtcaaacggcagtc
gatttgtatgccatagtgcaagcgttagccaatcccagtaatgaccgatatttacgggcg
gcgatcgccagcgaattattttgttatgacgccgccgccctagacgccttattcagcgaa
gaatggcaatggcaaaaattagttgagcaattcgcctactggcatcagttatggcaacgc
catgggttgatgatggcgctaaatattttaatgcgtcacttcagtattgcccaaagactg
gtagagcgatatcaagatggccaaaggcgtttaacggatctgcgccatttggtagaactg
ttgcaagtacaaagtcagttgatgtctggtgaaagccagcttttacattggtttcaagcg
cacttagccgagcctgacaacgacaatgaaggccaacaaattcgcttggaaacagaacaa
aatttagtgcaaatcattacgcagcacaccagtaaagggttggaatatcccttggtgttt
atcccgtttgccagccgctgccgagaaatgaaagaagccatttatcacagtgatacagat
ggtttggttatcgactttttaggtgcagaagaaaaccttgcacttgctgatcatgagcgc
ctcgcagaagatattcgcttactttacgtagcgctaacgcgagcagtacattattgtttt
ataggcttgtggaataacagccacccgcaacgtaaaaaagagtctcagttaatgcaaacc
gcccttgggcgaatattgtttgaccaaggtacatccataaatgatcaggtgattgcccag
cgcttaaacgatttatctcagtcgattgatttgggatatcaggggtttagggctgaagaa
gcccagcgcaatgtaaccgagcttaagcaactcttgcttactaaaagcacaaatggcctt
ggagttaatgcacagcaatcaggcgtcgctggtaaaaatcccacggatggcataaaagcg
tcaggtgatgaaagtgagaaaatacaacaaggcagtcacgtggcgttgcaagctgctcag
ttgcctaagcccgttacgcgtcgttggcgtttaaccagttattcagccattagtagtcag
cagcatcacgagtttgtggcaccaggccaagacgaaggcgtagataagcttgatttgatt
gccagtttagtgagcccaaaaagtgacgtaaatgagaatatttcgcctgttgtaagtcaa
acccagaatgtgcctacagatgatctaatagaaaacaacaataacagcctttcgctgatg
tcagatacagacatgtcattgcttggtgctgatgacgaagtgcttatcgaacaagaggta
ctagatcaattcacctttgtgaaaggggcgcaggccggttcatttttgcatggggtgctg
gagtcaattgatttcaccaacccggttaatttacaggatgtcattgtcgaaaagggcact
tggtatggtatcgaagagaaatggtttgaagcggttgaactgtggatccttgatgtgttg
caaactaagttgagcagccaaatcggagatgatgatagtcaccttgatgcgctgtgctta
ggcattttgtcaaaggaccaggtattggttgagatggaattttatttgccgttagttgat
gtaaaagcacagacatttaatcacattctcaaccagcatattcctcagcgccagcatcat
tatcagtttgaacaactaaacggcatgttaaaaggctttattgatttgactctgcaatac
caaggcaagttttatgtactggattataaatcgaattatttaggggctgattttgcggat
tatcatggcgaagcgatggcgagtgccatgcaagagcatgactactatttgcaagccatt
ttatatacggtggcgttgcaccgttggttgcaaaataacaaatcagattatgcctatgcc
gagcatattggcggggctttttacaccttcttgcgaggaatgcacagtgagaaacctggt
aatggcgtgttttatttactgcccaaacaagctttgattgacgacttagatgccttgttt
gacgggcgatatcagcctacatcacaaagtacatcttcaggcactaaacgtagcggcgat
gacgctccttcagggcaaggacaactggacttatggtaa
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