Paraglaciecola mesophila: FX988_00400
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Entry
FX988_00400 CDS
T06389
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pmes
Paraglaciecola mesophila
Pathway
pmes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
FX988_00400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmes03400
]
FX988_00400
Enzymes [BR:
pmes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
FX988_00400
DNA repair and recombination proteins [BR:
pmes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
FX988_00400
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FX988_00400
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FX988_00400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
DUF3922
Motif
Other DBs
NCBI-ProteinID:
QHJ10188
UniProt:
A0A857JG73
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All DBs
Position
complement(488378..489808)
Genome browser
AA seq
476 aa
AA seq
DB search
MSTPSIYWHDYETWGVNPQKDPACQFAGIRTDLDLNIISQPLMIFNQIPNDYLPHPQACL
ITGITPQHSLRDGMIEPEFIEKIHDEFSQPETCVAGYNNIRFDDEVTRYTLYRNFYDPYE
REWRNGNSRWDIIDVVRACYALRPDGIEWPLKEDGSPSFKLEDLSKANNIEHSAAHDAMS
DVYATIGVAKLVKAAQPKLYDYLFNLRLKKNVIALIDTQAHTPLVHISSKLPAINGCCTW
VAPIAQHPTNKNAFIVLNLSLDIQPLLALSVEEIIEKLYTPSSMLNEGEQRLPIKLIHVN
KSPVLAPAKTLNEENAARLGIDRQACLQNLQTLKQHPELVEKLIEVHRSESEHAPQEADH
SLYSGGFFSPRDRSLIDQVRQSTPEQLADLTLPFEDSRLANLLFYYKARNFPTSLNEQEM
QRWQNHRKFRLLDDASPSSITMSDYVQTLELLCEQYHSNSDKLAILKALYTYAEQL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgtccacaccctcaatctactggcacgattatgaaacctggggcgtcaatccgcaaaaa
gatcccgcttgtcaatttgccggtatccgtacggatcttgatttaaatataatttcccag
cctttgatgatatttaaccaaattcccaatgactatttacctcatcctcaggcttgttta
atcactggcattacgccgcaacacagcttgcgtgatggcatgattgagcctgaatttatt
gagaaaatacatgatgaattctcacaaccagaaacctgtgttgcgggctacaacaatatt
cgttttgatgatgaggtaacacgctacaccttataccgtaacttttatgacccgtatgaa
cgggaatggcgaaacggcaacagtcgctgggatataatcgacgtggtaagagcctgctac
gccctacgtcctgacggaattgagtggccgttaaaggaagatggtagcccaagttttaaa
ctagaagatttaagtaaggcaaataatattgaacattcagcggcccatgacgccatgtca
gatgtctacgcaacgattggcgtagcgaagctcgttaaagcggcgcagcctaaactgtat
gactatctatttaatttgcgacttaagaagaatgttattgcattaatcgatacacaagct
cataccccccttgtgcacatttcatctaaattgccggcaatcaatggctgctgcacttgg
gtggcaccgattgctcaacatcctacgaataaaaacgcctttattgttctaaacctttcc
cttgatattcagccattgctagcactgtcggtagaagaaatcattgaaaagttatacaca
ccatcaagcatgctcaatgagggagaacaaagattacccataaaattaatacatgtgaat
aaaagcccagtgcttgcgccagccaaaacattgaatgaagaaaatgccgcaagattaggc
atagatcgccaagcctgcttacaaaacctacagacactcaagcaacaccccgagctagtt
gaaaagctcattgaagtccatcgttccgaatcagagcatgctccccaagaagccgatcat
tccttgtacagcggcggtttctttagccctagggatcgctcgttaatagaccaagtgcga
caaagcacacccgaacagttagcagatttaaccttaccgtttgaagactcacgattagcc
aacttattgttctattataaagcacgtaactttcctacttctttaaatgagcaggaaatg
caacgttggcaaaatcatcgtaagttccgcttgttagatgacgcttctccatcaagcatc
actatgtctgattatgtgcagaccttagagcttctctgtgaacaatatcactcgaatagc
gataaattagccatacttaaagcgttatatacatacgctgaacagctttga
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