Paraglaciecola mesophila: FX988_00774
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Entry
FX988_00774 CDS
T06389
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmes
Paraglaciecola mesophila
Pathway
pmes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FX988_00774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmes03019
]
FX988_00774
Enzymes [BR:
pmes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FX988_00774
Messenger RNA biogenesis [BR:
pmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FX988_00774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
UTP25_NTPase-like
SPOR
Utp25_C
Cas3-like_C_2
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QHJ10560
UniProt:
A0A857JHA3
LinkDB
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Position
complement(925253..926539)
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AA seq
428 aa
AA seq
DB search
MNFSSLDLAPALQQAIDACGYKKMTPIQQKAIVIARRGRDVLASAQTGTGKTAAFAIPIL
QQMLDKPKDTVSGTPRAIILTPTRELAEQLASNIANYAQFTDISVTALYGGVKLGGQASK
LKAGVDIVISTPGRLLEHMTLKNIELANVEFVVLDEADRMLDMGFISDVRQMLAQIRAVR
QTLLFSATISPTVNELAHKLLKNHEEIRATQLNSAADTVQHVMYPVSEEDKIRLFKTLLA
EQNWYQVLVFTSTKEQADKLMAALKNSKINAGVCHADKSQGARRRAIADFKSAKLQVLIA
TEVAARGIDIQGLDHVVNYNLPYLPEDYVHRIGRTGRAGQQGNAISFVSREEERTVERIE
RLINCKIKRISRPDFAFSSRESLLKTVRKHSKSSRTNKATQTVIRMDKTSAKAKPKTKAK
AKRPNKKS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaacttttcatcattagatttagcgccagcgttacaacaagccattgatgcttgcggt
tacaagaaaatgacgcccattcaacaaaaagccattgtgatcgcccgcagaggtcgtgat
gtgctcgctagcgcccaaaccggtacgggaaaaacagcagcgtttgccatcccgattttg
caacaaatgctcgataaaccaaaagacaccgtttcgggtacgcctagggcaatcatttta
acgccaacacgcgaattagctgagcagctagcgtctaatattgctaactatgctcaattt
accgatatctctgttactgcactgtatggtggggtaaaacttggtggtcaagcaagcaag
ttaaaagcgggagtggatattgttatttctacgcctggacgtttgctcgaacacatgaca
ttgaagaatattgagttggctaacgtagaatttgtggtgctcgatgaagccgatcgcatg
ctagatatgggctttatatccgatgtgcgtcagatgcttgctcagatacgggctgtgcgt
caaacattactgttttctgcgaccatttcaccaacggtgaatgagcttgcccataagtta
ttaaaaaatcatgaagaaattcgcgctacccagttaaacagtgcagcagatacggttcaa
catgtgatgtacccggtgtctgaagaagacaaaattcgcttgtttaagacattattagcg
gaacaaaactggtatcaagtattggttttcaccagtactaaagagcaagccgataaatta
atggctgctttgaaaaacagtaaaatcaatgctggtgtatgccatgccgataaaagccaa
ggtgcgcgccgtagagccattgccgatttcaaatcggctaagcttcaagtgcttattgcc
actgaggttgcggctcgagggattgatattcaaggtcttgatcacgtggtaaattataac
ttaccttatttacctgaagattatgtacaccgtattggtcgaacaggacgtgctggccag
caaggtaacgccatttcattcgtaagccgtgaagaagagcgaacagtagagcgtattgaa
cgtttgattaattgcaaaattaaacgtatttcacgccccgattttgcctttagtagccgt
gagtcgttgttgaaaacagtgcgcaaacacagcaaaagtagccgcaccaataaggcgacg
caaacggtcattcgcatggacaaaacgagcgcaaaggcaaaacccaaaacgaaggcaaaa
gcaaagcgcccaaataaaaaatcgtaa
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