Paraglaciecola mesophila: FX988_01002
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Entry
FX988_01002 CDS
T06389
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pmes
Paraglaciecola mesophila
Pathway
pmes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FX988_01002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmes03019
]
FX988_01002
03016 Transfer RNA biogenesis [BR:
pmes03016
]
FX988_01002
Enzymes [BR:
pmes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FX988_01002
Messenger RNA biogenesis [BR:
pmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FX988_01002
Transfer RNA biogenesis [BR:
pmes03016
]
Prokaryotic type
tRNA degradation factors
FX988_01002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
S1_2
KH_KhpA-B
Ferritin
DNA_pol3_a_NI
Motif
Other DBs
NCBI-ProteinID:
QHJ10781
UniProt:
A0A857JII3
LinkDB
All DBs
Position
complement(1175947..1178058)
Genome browser
AA seq
703 aa
AA seq
DB search
MTPITKSFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTV
NYQERTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSAN
PEIPTDIISLIGTSAALAISGMPFNGPVGAARVGYTDGQYVLNTRTSELETSQLDLVVAG
TQSAVLMVESEAEVLSEDVMLGAVMYGHEQMQTVVNAVNEFAAEVNTPKWDWVAEPANVS
LKDKIKALAEAEMTEAYQISDKMARKDAIVALTDKTVAAIVEADEEQDAKEVAELLHELE
SDVVRSRILAGQPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERD
AQMIDGLNGKEDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSEKEF
PYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSDI
LGDEDHLGDMDFKVAGTTDGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQAI
SGHRDEMSEFAPRIYTLKIDQDKIRDVIGKGGAMIRAITEASDTNIEIEDDGTIKIFATE
RAKADIAISKIEQVTADVEAGKTYEGKVTRIVDFGAFVEILPGKEGLVHISQIAHERVNK
VADHLSEGQIINVKVMEIDRQNRVRLSIKELLEKPAAPAEGNE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgactcctattactaaatcatttcagtatggtcagcatactgtcacgctagaaacgggc
gtaatcgctcgtcaagcaaccgctgctgttatggcaagcatggacgacacatcagtgttg
gtttctgttgttggtaaaaaagacaccaagccaggccaagacttcttcccattaacggtt
aactaccaagaaagaacctatgctgcgggtaaaatcccaggtggtttcttcaagcgtgaa
ggtcgtccttctgaatacgaaacacttacgtctcgtttgattgaccgtccaattcgtcca
ttattccctgatgggtttatgaatgaagttcaaattatcgtcactgttgtttcagcgaat
cctgaaattccaactgacattatctcactcatcggtacgtcagcggcgcttgctatttca
ggtatgccgttcaatggccctgttggtgcagcgcgcgttggttatactgacggccaatat
gtacttaatacacgtacatcagagcttgaaactagccagctagacctagttgttgcaggt
acgcaaagcgctgtattgatggttgagtctgaagctgaagtcttatctgaagacgttatg
ctgggcgctgttatgtatggtcatgagcaaatgcaaactgttgttaatgccgttaatgaa
tttgctgctgaagtgaacacgcctaagtgggattgggttgctgagcctgcaaatgtaagc
ttgaaagataaaattaaagcacttgctgaagctgaaatgacagaggcgtatcaaatctct
gacaaaatggcgcgtaaagatgcgattgttgcattaactgacaaaacggttgctgccatc
gttgaagcggatgaagagcaagatgcaaaagaagtggctgagcttttacatgaacttgaa
agtgacgtagtacgttcacgtattcttgctggtcaaccgcgtatcgatggtcgtgaccct
gcgatgatccgtgcacttgacgtagcgacgggaattttgccacgtacccacggttctgct
ttgttcacgcgtggtgaaacacaagcaatcgtagctgctaccttagggacagagcgtgac
gcacagatgattgacggccttaacggtaaagaagacagccgtttcatgttgcactataac
ttccctccatactgtgttggcgaaactggttttgttggttctcctaagcgtcgtgaaatc
ggccacggtcgtttagcaaaacgcggtattcaagcggttatgccgtctgaaaaagaattc
ccgtacgtagtacgtgttgtatctgaaatcactgaatcaaatggttcatcttcaatggca
tcagtttgtggtacctctttggcattgatggatgcgggtgtgccaattaaagcatcagta
gctggtattgctatgggtcttgtgaaaaatgacgaaaacttcgttgttctttcagacatc
ttgggtgatgaagatcatcttggtgacatggactttaaagtagccggtaccactgacggt
atcactgcgctacaaatggatatcaaaatcgaaggtatcactcaagaaatcatgcaagtt
gcccttaagcaagctaaagaagcacgtttgcatattctaggcgtgatggaccaagctatt
tctggtcaccgtgatgaaatgtctgaattcgcaccgcgtatttacacattgaaaatcgac
caagacaaaatccgtgacgtgattggtaaaggtggcgcgatgatccgtgcgattactgaa
gcatctgataccaacatcgaaatcgaagatgatggcacaatcaaaatcttcgctaccgag
cgtgcaaaagctgacatcgctatcagcaaaattgagcaggtaactgctgatgttgaagca
ggtaaaacctacgaaggtaaagtaacacgtattgttgatttcggtgcgttcgttgaaatt
ctacctggtaaagaaggtctagttcacatttcacaaatcgctcatgagcgtgtgaataaa
gtggctgaccatcttagcgaaggtcaaatcattaatgttaaagtgatggaaattgaccgt
cagaaccgtgttcgtttgagcataaaagaattgctagaaaagccagcagcacccgctgaa
ggcaacgagtag
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