Paraglaciecola mesophila: FX988_01224
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Entry
FX988_01224 CDS
T06389
Name
(GenBank) hypothetical protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmes
Paraglaciecola mesophila
Brite
KEGG Orthology (KO) [BR:
pmes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmes03032
]
FX988_01224
03400 DNA repair and recombination proteins [BR:
pmes03400
]
FX988_01224
Enzymes [BR:
pmes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FX988_01224
DNA replication proteins [BR:
pmes03032
]
Prokaryotic type
DNA Topoisomerases
FX988_01224
DNA repair and recombination proteins [BR:
pmes03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FX988_01224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QHJ11002
UniProt:
A0A857JI80
LinkDB
All DBs
Position
complement(1408662..1409648)
Genome browser
AA seq
328 aa
AA seq
DB search
MERYILRKPFGDKFTYQYPSGRTVKNKGIKRWVQSLAIPPAWQEVHIELDRSAKVLAFGR
DKQNRKQYIYNPKWTEQASEQKFARILRFAKALSTMRRVTGQHITQRPINERVVLACMTR
MLDDSFFRPGNPTYTKDNQTYGLTTLRVKHMSIKHNQVEFDYIGKSHQQQHREIHDKHVT
KILTQLEQMTGYELFDITLPEGERKKITAQDLNQYIAEVMGEDFSAKDFRTWAGTVLMAI
ALDEFGPADNEKLSQSNVLAAVKKVASELGNTPAVCRSNYIHPNVILHYESGRTLAYFRK
QLKRTKAKYFSPDEKATLKLLEYLIDTN
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggagcgctatattcttcgaaaaccattcggtgataagtttacctaccagtacccctct
ggaagaacggttaaaaacaagggaattaagcgttgggtgcaaagcttggctatcccacct
gcgtggcaagaggtacatattgaacttgatcgcagcgccaaggtattggcctttggccgc
gacaagcaaaatcgtaaacagtatatttacaatcccaaatggaccgagcaggccagcgaa
caaaaatttgcacgtattctgcgttttgcaaaagcgttatcgaccatgcgacgcgtcact
gggcagcatattactcagcgacccattaatgaaagagtggtgctggcttgcatgacgcgt
atgctggatgattctttttttcgcccaggtaaccctacctacacaaaagacaaccaaacc
tatggcctaacgacacttcgcgtaaagcacatgagtattaagcacaatcaagtggaattt
gattacattggaaaaagccatcaacaacagcaccgtgaaatccacgacaaacacgtcact
aaaatattgactcaacttgagcaaatgaccggctatgagctatttgacattacgttgcca
gagggagagcgcaagaaaataactgcgcaagatctcaaccaatacattgcagaagtgatg
ggggaagactttagcgccaaagactttagaacctgggcgggcacggtactgatggccata
gcacttgatgaatttggccctgctgataatgaaaagctcagtcaaagtaatgtgttagcc
gctgtcaaaaaagtggcgagtgagctggggaatacaccagcggtgtgccgttcaaattat
attcatcccaatgtgattttgcattatgaaagtggaagaaccttggcttattttcgcaaa
caacttaagcgcactaaagctaagtattttagcccagatgaaaaggccacattgaaacta
ctagaatacttaattgacacaaattga
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