Paraglaciecola mesophila: FX988_01438
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Entry
FX988_01438 CDS
T06389
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pmes
Paraglaciecola mesophila
Pathway
pmes03030
DNA replication
pmes03430
Mismatch repair
pmes03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FX988_01438
03430 Mismatch repair
FX988_01438
03440 Homologous recombination
FX988_01438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmes03032
]
FX988_01438
03400 DNA repair and recombination proteins [BR:
pmes03400
]
FX988_01438
Enzymes [BR:
pmes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FX988_01438
DNA replication proteins [BR:
pmes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FX988_01438
DNA repair and recombination proteins [BR:
pmes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FX988_01438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QHJ11210
UniProt:
A0A857JJ77
LinkDB
All DBs
Position
complement(1658357..1661824)
Genome browser
AA seq
1155 aa
AA seq
DB search
MSDCKFVHLRVHSDYSMLDGLNKVKPLISHVKSLNMPAVALTDQMNMCGLVKFYEQAHAN
GIKPIIGTDFWVQSSALEDHIFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAVIDQQW
LAEHSEGVIILSGGRMGDLGVYLTKGNVGLAEKATAFYQQHFPDRFYLELTRTARAGEED
YIHRAVEWAGQHDLPVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKLYSEQQYM
RSSEEMCELFADIPQAIENTVEIAKRCNVSVLLGTYFLPDFPTGDMSIADFLVKVSEEGL
EKRLAFLFPNEEERLAKRPEYDERLKVELVVINQMGFPGYFLIVMEFIQWSKDNGIPVGP
GRGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
MYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPGMTLTKAFEEEPR
LPELYAYDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPDKITDFAPLYCDDEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIQWAIDMISSGKGIDIDILAIPMDDKKSFKLLQRAE
TTAVFQLESRGMKDLIKRLRPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYP
DATYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGADLLRRAMGKKKPEEMAKQR
ESFETGAKNNNIDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMA
AVMSADMDNTDKIVTLVDECQRMGITLLPPDVNAGSYKFTVDSEGRIVYGIGAIKGVGEG
PIAAIIEARENHEKFSDLFDFCAKVDTKRINKRVLEKLVYAGALDNLGPHRASIMATLPE
AIAAADQHAKAESHGQSDMFGLLTTEPEQVEQAFVKVPPWPEKVWLDGEKDTLGLYLTGH
PINQYLQEIKHYCTGRLIDLKPTNKDVVSYAVGLVLGVRVMTNKRGRRWGIVTLDDKSAR
IDVRFFPDLFEQYEEILQSDRILVVSGQVSFDEFSGGNTIGARDAMDIVQAREKNAKWLS
MQFDSSWCNASTLAKLQAILTPYQGGSCPVQAHVVHPDAEVTLALGAQWYVTPEDQLLFE
LQQQFGKEHVELVFH
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattgtaaatttgtacacttaagagttcacagtgattactccatgctggatggt
ttgaacaaagttaaaccactcatttctcatgtaaaatcactcaacatgcccgccgttgcg
ctgactgaccagatgaatatgtgtggcttggtgaagttttacgagcaagcccatgcaaat
ggcatcaaacctattataggaaccgatttttgggtgcaatcgtcagcgcttgaagatcat
atttttcgcctaacgctgttggcggccaataacaaaggctataaaaatattaccttgctc
atttccaaagcctatttacgcggaagtgtgcaagataaggcagtgattgaccaacaatgg
ctagccgaacacagtgaaggtgtgattattctctctggtggtcgcatgggcgatctgggg
gtttacctaaccaaaggtaatgtggggctagccgaaaaagccactgcattttaccaacag
cattttcctgaccgtttctatttggagttaacacgtacagcacgcgccggtgaagaagat
tacattcaccgagctgttgagtgggcagggcagcacgacttacctgttgtcgctacaaac
gaagtgtgctttatctctcctgataactttgaggcccatgaaattcgtgtcgcgatccac
gatggttacacactgaacgatcctcggcggcccaagttatacagtgaacaacaatatatg
cgcagcagcgaagaaatgtgcgagttgtttgccgacatacctcaggcgattgaaaacacc
gtcgaaattgctaagcgatgcaatgtatctgtgttactgggcacttactttttgccggat
ttccctactggggatatgtcgattgccgattttctagttaaggtctcagaagagggactg
gaaaagcgcttggcctttttgtttccaaatgaagaagaacgactcgccaaacgccctgaa
tacgacgagcgtttaaaagtagagttggtggttatcaaccaaatgggctttcctggttac
ttcttgatcgtgatggaatttattcaatggagtaaagataacggtattcctgttggccct
ggccgaggatcaggtgcgggttcattggttgcctatgccttggggatcaccgacttggat
cctctcgaattcgatttgctattcgaacgatttttgaacccagaacgggtttcaatgccg
gattttgacgtcgatttctgtatggacagacgcgacgaagtcatcgatcatgttgccgaa
atgtacggccgtgatgcggtatcgcaaattattacctttggtactatggctgcaaaagcc
gttgtgcgcgatgtagggcgtgtgttaggtcatccttatggctttgttgatcgcatctct
aagcttattccacctacgccagggatgacattaaccaaagcgtttgaagaagagcctcgt
ctccctgagctttacgcctatgacgaagaagtgaaagatctgatcgacatggcgcgcatt
cttgaaggggtaacccgtaacgcaggtaaacacgccggtggtgtggtgattgccccagat
aaaattaccgacttcgctccgctttattgtgatgatgagggtaaaaacccggttactcaa
tttgataaaaatgatgttgaaaccgctggtttagttaaattcgatttcttgggcttgcgc
acgctgacgattattcagtgggctattgatatgatttccagtggtaagggaattgatatt
gatatattagcgattccaatggatgacaaaaagtcgtttaagttactgcaacgcgcagaa
actacagcggtattccaattggaatctcgcggtatgaaggatttgatcaagcgacttcgc
ccggatagtttcgaagatatcattgcattggtggcgctgtttagacctggccctttgcaa
tcaggcatggttgataactttattgaccgtaaacatggtcgagaagccatttcctatcca
gatgcgacttaccaacatgaatgcttgaaagaaattcttgaacctacttacggtattatt
ttgtaccaagagcaggtcatgcaaattgcgcaggaaatgtctggttacagcctaggcggc
gcggatttgctgcgccgagctatgggtaaaaagaaacccgaagagatggcaaagcagcgt
gaatcgtttgagacaggcgcgaaaaataacaacattgatccagagttggcgattaagata
ttcgacttggtagaaaaattcgctggctatggttttaacaaatcacactcagcagcctat
gcattggtgtcttatcaaacgttatggttaaaaacccattatcccgctgaatttatggct
gcggttatgtctgcggatatggataacacagacaaaatcgtcaccttggtcgatgaatgt
cagcgtatgggcattaccttgttgccacctgatgtaaacgctggtagctacaaatttaca
gtggatagcgaagggcgcatcgtatatggcataggggcgattaaaggggtgggtgaaggc
ccgattgccgcgatcattgaagcgcgggaaaatcacgaaaaattctctgacttgttcgat
ttttgtgccaaagtcgataccaaacgtataaataaacgtgtgctcgaaaagctcgtttac
gctggggcattagataaccttggccctcatcgcgcatcaattatggcgaccttgcccgaa
gccatcgcggcggctgatcagcacgctaaagctgagtctcatgggcaaagtgatatgttt
ggtttattaaccactgagcctgagcaagtagagcaagccttcgttaaagtgccaccttgg
ccagagaaagtatggcttgacggtgaaaaagacacgttaggcctttatttgactggccat
ccaattaatcagtatctgcaagagattaaacactactgtactggtcgcttgattgatctt
aaaccgactaacaaagacgtagtgtcctacgcggtagggttagtactcggcgtacgcgtc
atgactaataaaagagggcggcgctgggggattgtcacattagatgataaaagtgctagg
atagatgtacgttttttccccgatctgtttgaacaatacgaggaaatactgcaatctgac
cgaatattggtggtaagtggacaggtcagctttgatgaattttctgggggcaatacaata
ggcgcccgcgatgccatggacatagttcaggcgagggaaaagaacgcaaaatggttaagc
atgcagtttgattctagctggtgtaatgcatcaacactcgctaaactgcaagcaatatta
acgccttatcaaggtggcagctgtccggtacaagcccatgttgtacatccggatgctgaa
gtgacattggctttaggtgcgcagtggtatgttacccctgaggatcagttactttttgaa
ttacagcagcagttcggtaaagagcatgttgaactggtgtttcattga
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