Paraglaciecola mesophila: FX988_02093
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Entry
FX988_02093 CDS
T06389
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pmes
Paraglaciecola mesophila
Brite
KEGG Orthology (KO) [BR:
pmes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmes03019
]
FX988_02093
Enzymes [BR:
pmes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FX988_02093
Messenger RNA biogenesis [BR:
pmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FX988_02093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Flavi_DEAD
CON_HrpB
Motif
Other DBs
NCBI-ProteinID:
QHJ11857
UniProt:
A0A857JLL2
LinkDB
All DBs
Position
complement(2445348..2447828)
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AA seq
826 aa
AA seq
DB search
MPSVKTSLPVEEILPSLNNNLDNRDVILVAPPGAGKSTRVPLALLRHSVFMKQKIIMLQP
RRIAARNIAHFLARQLGEEVGQTVGYRIRGESKVGKDTRLEIVTEGILTRMLQNDPELSE
IGLVIFDEFHERSMHADFSLALCLEVKEALRDDLRLLVMSATLDVSSIRQLLPRAESIAC
SGRSYPIETIYRPDSSKGSIVDKTARLTLFAASEHQGDILVFLPGQGEIRRCERVLAQSL
TKDTQIHCLFSQQAMSAQEAALTPDPHGRRKVILATNIAETSLTIEGVSVVVDSGMQKQA
IFQLTKGLTQLHNRMISKASATQRAGRAGRLGPGVCYRLWSEEQHQRLVEHDKAEILTKD
LSSFLLEACMWGAKITDFALIDMPSEAQITQAHSVLMDLQIVDEHLNVSQHGKAVHTLGS
QVHIGTMLLKSRQLSPAHQSLACALAVLLEDKDPMGNQAGSLCYERLSLLQQQKNHPLWH
GIRQWHKKLECKLTPWPLKDTAVLMGYAFPHWIGKASGATRFTLVNGTGAQLLEHDPLIG
QDWLAVGNMLLTDSSLANARITLAEPLSRQQIDQYFSHLIVVETRCEWDTSRAAISSHTV
QRLGGIVMQKTPSAKPSSEQIIVLWHKQIDARGIMGLPFNEAALQLIYRLRLAKQHLPGG
QWPDVSEAGLLNSVEQWLMPYLHDVLSWQQLTKVDFYSLLLNQLNYIDQQALNQLLPTSL
TVPSNSRIRLHYDDAGGVSLSVRMQEVYGLKETPRVARGNVKVQMVLLSPAGRPLQKTQD
LAGFWQGSYKEVQKEMKGRYQKHFWPDDPASAPATTKTNKRRLGSN
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
ttgccttctgtgaaaacgtcattacccgtcgaagaaattctaccttcattgaacaataac
ctagataaccgagatgtcattctagtcgcgcctccaggagccggtaaatcaactcgagtg
cctttggcgttattgcgccatagtgtttttatgaagcaaaaaatcattatgttacaacct
agacgaattgctgcccgcaatattgcgcattttctagcgcggcaattaggggaggaggta
ggtcaaaccgtgggttaccgaatacgtggcgagagcaaggtgggtaaagatactcgttta
gaaattgtcacagaaggtattttaactagaatgctgcaaaatgaccctgaattatcagag
attggtttggttatttttgacgagtttcatgaacgtagcatgcatgctgatttttcacta
gcgctgtgcttagaagtcaaagaagccctgcgggatgatttgcgcctattggtaatgtca
gcgacgcttgatgtctcaagtatcaggcagcttttgcctcgtgccgagtccatcgcttgt
agcggcagaagttatcctattgaaaccatctatcggcctgattccagcaaaggctcaatc
gttgataaaactgcgcgcctcacattatttgctgcatctgaacatcagggagacattttg
gtgtttctgcccggccaaggcgaaattcggcgttgtgaaagagtactcgcccagtcgctg
acgaaagacacccaaatacattgtttgttttcacaacaagcaatgtcggcgcaagaagca
gccttaacaccagatcctcatggacgccgcaaagttatactggcgactaatattgcagag
accagtttaaccatagagggcgttagtgtggtggttgacagtggcatgcagaagcaagct
attttccagttaactaaggggttaacccagttacataaccggatgatttctaaggcgtcg
gcaacccaacgagcgggccgtgctgggcgcttggggccgggtgtttgctaccgtttatgg
agtgaagaacagcatcaacgcttagtggagcatgacaaagcagaaatactgaccaaggat
ttatcgtcctttttgctcgaagcctgtatgtggggggcaaagatcactgactttgccctt
attgatatgcccagcgaagcgcagattacccaagcacatagtgtattgatggatctgcaa
atagttgatgaacatttgaatgtgagtcagcatggtaaggctgtgcacacgcttggtagc
caggtacatataggtacgatgttgcttaagagccgtcaattgagtcctgctcatcaaagc
ttagcttgcgctttagcggtcctactagaagataaagaccctatggggaatcaagcgggt
agtttgtgttacgaacgcctatcgctgttacagcaacagaaaaatcacccactttggcac
gggatacgccagtggcataaaaaacttgaatgtaagttaacgccatggccattaaaagac
acggctgtgttaatgggctacgcctttccacattggattggcaaggcaagtggtgcgaca
cgcttcactctggtcaatggcactggtgctcagcttttggagcatgacccgttaatcgga
caggattggctcgctgtcggtaacatgttactgaccgatagtagtctagcaaatgctcga
attacccttgctgaacccttgagtcgtcagcaaatagaccagtatttcagtcacctcatc
gttgttgaaactcggtgtgaatgggatacctctcgggcggctatttcaagtcacactgtg
cagcgtttggggggcattgtgatgcaaaagacacccagcgccaagccaagtagtgagcaa
atcatcgtgctttggcacaagcaaattgatgcgcgcggtataatgggactgccgtttaac
gaggcggcactacaacttatctatcgtttgcgtttagctaaacaacacctaccaggtggg
caatggccagatgtaagtgaagctggcttgctaaatagtgtagagcagtggttaatgccg
tatctgcacgatgtattgagttggcaacaactgactaaagttgatttttattctttgctg
cttaatcagttaaattatatcgatcagcaggcgttaaatcagctgttgcccactagttta
acggtcccaagtaacagccgtatccgcttacattacgacgatgcaggtggagtgtcttta
tccgtcagaatgcaagaggtatatggcttaaaggagacacctagggttgctagaggaaat
gtaaaagtacagatggttttactctcaccagcgggacgaccgctacagaaaacacaagat
ttagctgggttttggcaaggtagctacaaagaagtgcaaaaagaaatgaaaggtcgttat
caaaagcatttctggccagatgatcctgcatcagccccggctacgacaaaaacaaacaag
cgacgcttagggtcaaactga
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