Paraglaciecola mesophila: FX988_02413
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Entry
FX988_02413 CDS
T06389
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pmes
Paraglaciecola mesophila
Pathway
pmes03420
Nucleotide excision repair
pmes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FX988_02413
03430 Mismatch repair
FX988_02413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmes03400
]
FX988_02413
Enzymes [BR:
pmes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FX988_02413
DNA repair and recombination proteins [BR:
pmes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FX988_02413
MMR (mismatch excision repair)
Other MMR factors
FX988_02413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
QHJ12162
UniProt:
A0A857JLD9
LinkDB
All DBs
Position
2783175..2785349
Genome browser
AA seq
724 aa
AA seq
DB search
MDVSRLLEQLNDKQRDAVASPAADMLILAGAGSGKTRVLVHRIAWLMEVEGIAPWGILAV
TFTNKAAREMRGRIEELQGSALSNMWIGTFHGIAHRLLRTHYAEAKLPENFQILDSDDQY
RLVRRVIKSMNLDEKQWAPKHVQWYINGNKDEGLRPEHIDTHGDYNQKKLCEIYQVYQQT
CERAGLVDFAELLLRAHQLWVENPELLKHYQNRFRAVLVDEFQDTNNIQYAWLRLLAAPT
NNMIIVGDDDQSIYGWRGANVQNIQHFLRDYPQAKTIRLEQNYRSTGNILKAANAVIDNN
QGRLGKELWTEGADGEPISLYAGFNELDEARFAVSRIKDWQTQGYALSDCAILYRNNAQS
RVLEEALLQESVAYRIYGGLRFFERQEIRDALGYLRIINQQIDDAAFERVVNTPTRGIGD
KTLAQVREQAKESDLSMWQASLQLLREKRLSGRAANALQGFIDLVLLLQKDTQDLPLEQH
ADHVIKHSGLYAMYKAEKGEKAQARIENLEELVTACKQFAPPEEAENMSPMSAFLAHASL
EAGDAQADKHQDAVQMMTIHTAKGLEFPMVLLVGVEEGMFPSQMSNDEPGKIEEERRLCY
VGMTRAMQKLYLTYAESRRVYGQDKYHTPSRFIKEIPSEYIEEVRLRTKATVSRPMQSRF
QSSASHTAFDSTGFKLGERVSHRKFGEGTVLNYEGSGEHARVQVNFDNVGSKWLVLSFAK
LDRI
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggatgtatctcgacttttagaacaactcaacgataaacagcgcgatgcggtggcctca
cccgctgcggacatgcttattttggctggcgcaggcagtggtaaaacccgcgttttagtg
catcgcattgcgtggttaatggaagtagaaggtatagccccttgggggatcctagccgtt
acgtttaccaataaagccgcgcgggaaatgcgcgggcgtatcgaagagttgcaaggcagt
gcactgagtaatatgtggataggcacgttccatggcatcgcccacaggttgctgcgcacc
cactatgcagaagctaagttacccgagaactttcaaattttagattctgatgaccaatac
cgcttagtgcgccgcgtcatcaaaagtatgaatctagatgaaaaacaatgggcccctaaa
catgttcagtggtacatcaatggcaataaagatgaaggcttacgccctgaacatattgac
acccacggcgattacaaccagaaaaagctctgtgaaatctatcaggtgtatcaacaaacc
tgcgaacgtgcgggtttagtcgactttgccgagttattactgcgcgctcatcaactatgg
gtggaaaacccagaactgcttaagcactatcaaaatcgctttcgcgcggtcctggtggac
gaatttcaagataccaataacatccaatatgcctggctacgccttttggctgcccccact
aacaatatgattattgtgggtgacgacgaccaatctatttatggttggcgcggtgccaac
gtacaaaatattcagcattttttacgtgactacccgcaggcgaaaaccatacgcttagag
caaaactatcgctccacaggtaatattcttaaagcagctaatgcggttatcgataacaac
caaggtcggctaggcaaagaactatggactgagggagctgatggcgagcctatctcctta
tacgcaggttttaacgagttagatgaagcccgctttgcagtatcacgtataaaagactgg
caaacccaaggttacgcccttagcgattgtgcgattttataccgcaacaacgctcaatct
cgcgtgctcgaagaagccttattgcaagaatcagtagcctatcgaatttatggtggtctg
cgattctttgaacgccaagaaattagagacgctttaggttatctgcgcatcattaatcaa
caaattgacgatgctgcatttgaacgcgtggttaatactcctacgcgtggcataggtgac
aagacgttggcccaggtacgcgaacaagccaaagaaagcgacttgtccatgtggcaagcg
agcttacaactactgcgagaaaagcgcttgtcaggccgtgcagctaatgcgctgcaaggc
tttatcgatttagtcttattgctgcaaaaagacacccaagacttaccccttgaacagcat
gctgatcacgtgattaagcattccggtttatacgccatgtacaaagcagaaaaaggcgag
aaagcccaagcacgtattgaaaacttagaagagctcgttactgcgtgtaagcagttcgcg
ccccctgaagaagctgaaaacatgagccctatgtcagcgtttcttgctcatgcttcactt
gaagcgggtgatgctcaggccgataagcatcaagacgccgttcagatgatgaccatacac
acagccaaagggctagaattccctatggtgttgttggtcggtgttgaagagggtatgttt
ccgagccaaatgagtaacgatgagccgggtaaaatcgaagaagaacgacgcttatgctat
gtcggcatgacgcgcgccatgcagaaactctatctaacctatgctgaaagtcgccgcgtg
tacgggcaagacaaataccacacgccttcgcgatttatcaaagaaatacccagcgaatat
attgaagaagtccgcttgcgcacaaaggccacggtttcaaggccaatgcagagtcgcttt
caatcatccgccagtcacaccgcgtttgactctaccggctttaaactcggtgagcgcgta
tcccatcgcaaattcggtgaaggaaccgtgcttaattatgagggcagcggggaacacgcg
agagtgcaagtcaatttcgataatgtcggcagtaaatggttagtattgtcattcgccaaa
cttgaccgaatatag
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