Paraglaciecola mesophila: FX988_02456
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Entry
FX988_02456 CDS
T06389
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pmes
Paraglaciecola mesophila
Pathway
pmes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FX988_02456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmes03019
]
FX988_02456
03400 DNA repair and recombination proteins [BR:
pmes03400
]
FX988_02456
Enzymes [BR:
pmes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FX988_02456
Messenger RNA biogenesis [BR:
pmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FX988_02456
DNA repair and recombination proteins [BR:
pmes03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FX988_02456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Hanta_Gn-B
Motif
Other DBs
NCBI-ProteinID:
QHJ12205
UniProt:
A0A857JJI4
LinkDB
All DBs
Position
2827930..2829729
Genome browser
AA seq
599 aa
AA seq
DB search
MPSTDINAAQIVLKNVFGYDEFRDGQREVIEQILQGKDVLVLMPTGGGKSLCYQIPALVL
DGLTIVISPLIALMKDQVDALVASGVNAAYINSNLSNEEMFNVYRGMQDERYKLIYVAPE
RLMQFEFIQRLHSLNVALFAVDEAHCVSHWGHDFRKEYRQLGQIKQQFPGVPVVGLTATA
DITTRSDILQQLALEQPFVFKGSFDRPNIRYNQLFKYKATDQVIQYVKQQDGSGIIYCNS
RKKVDDLSIALAKQGINCAGYHAGLEGPIRDKIQRDFIQDNVDIIVATVAFGMGINKSNV
RFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARIRQWIGMGDNPARLDIEL
QKFAAMEAFAEAQTCRRQVLLNYFSEYSAEDCGNCDICLDPPKRFDGKVSAQMVLSCIYR
LGQNVASQYVIDVLRGKKLKRIFEQGHDGLSTFGIGKDKSDAHWHNIIYQLIHKGFLRID
ITQSAVLKLTEEARGLLAGKLDLALAVPRLTIDSGKKSKLKEMNYDRKLFAKLKHLRKSI
AQREDVPPFVVFSDATLADMADKLPQSKAEFLEINGVGQTKLDRYGTEFLAAIAAYSLS
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgccaagtactgatataaacgccgcgcagattgtacttaaaaacgtattcggctacgac
gagtttcgtgacggtcagcgcgaagttatcgagcaaatattgcagggaaaagatgtactg
gttcttatgcccactggtggcggaaaatccttgtgttatcaaatacccgcgctagtgctt
gatggattgaccatcgttatatcgcctcttattgcactgatgaaagatcaagttgacgcc
ctagttgcctcaggtgtaaatgccgcttatatcaattcaaatttaagcaatgaagagatg
tttaacgtttaccgtggtatgcaagatgagcgctataaactgatttatgtcgcacctgaa
agacttatgcaatttgaattcattcaacgtcttcacagtttaaacgtggcgctctttgca
gtagatgaagctcactgcgtctcccattggggacatgactttcgcaaagaataccgccag
ctaggtcaaataaaacagcaatttcctggggtacctgtggtagggctgacggcaacggct
gatatcacaacgcgcagtgatatattgcaacagctcgctttagagcagccttttgttttt
aaaggcagcttcgatagaccgaatattcgttacaaccagctgttcaaatacaaagctacg
gatcaggtcattcaatatgtaaaacaacaagacggcagtgggattatttactgtaacagc
cgtaaaaaagtcgacgacttaagtattgcattagcgaaacaaggtattaattgcgcgggt
tatcacgcgggacttgagggaccaatacgcgataaaatacagcgcgactttattcaagat
aatgtggatatcatcgtcgccactgtcgcttttggcatggggatcaataaatctaatgta
cgttttgttgtgcattttgatctccctcgcagtgttgaagcttattatcaagaaacaggc
cgtgcagggcgtgatggcatgcctgctgaagcgctattgttatttgatgaaaaggacgcc
gctcgtattcgacaatggattggtatgggagacaaccccgcgcgtttagacatcgaacta
caaaagtttgctgccatggaagccttcgcagaagcgcaaacctgtcgccgccaagtgtta
ctcaactatttttctgagtattccgctgaagactgcggaaactgcgatatttgcttagat
ccacctaaacgttttgatggcaaagtctcggcacaaatggtcttgtcgtgtatttatcgc
ctgggtcaaaatgtggccagccaatatgttatcgacgtgctacggggcaaaaagttgaaa
cgtattttcgagcaagggcatgacggtctaagcaccttcggcatagggaaagataaatca
gatgcccactggcacaacatcatttatcagctgatacacaaaggttttttacgcatcgac
atcacccaaagcgcggttttaaaattaacagaagaggcccgtggccttcttgctggtaaa
ttagatcttgctttagcggtacctaggttaaccattgattcaggtaaaaagtctaaactg
aaagagatgaactatgaccgtaaattattcgcaaaattaaaacacttacgtaagtccatt
gcacaacgcgaggacgtaccgccgtttgtggtatttagtgatgctacccttgccgatatg
gctgacaaattgccccaatcaaaagcggagtttttggagatcaacggcgtaggccaaacc
aaactagaccgttacggaactgaatttttagcggcgatagccgcttattcactgtcctaa
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