Paraglaciecola mesophila: FX988_02608
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Entry
FX988_02608 CDS
T06389
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pmes
Paraglaciecola mesophila
Pathway
pmes03030
DNA replication
pmes03410
Base excision repair
pmes03420
Nucleotide excision repair
pmes03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FX988_02608
03410 Base excision repair
FX988_02608
03420 Nucleotide excision repair
FX988_02608
03440 Homologous recombination
FX988_02608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmes03032
]
FX988_02608
03400 DNA repair and recombination proteins [BR:
pmes03400
]
FX988_02608
Enzymes [BR:
pmes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FX988_02608
DNA replication proteins [BR:
pmes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FX988_02608
DNA repair and recombination proteins [BR:
pmes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
FX988_02608
NER (nucleotide excision repair)
GGR (global genome repair) factors
FX988_02608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WHD_BrxR
HHH_5
DUF561
Motif
Other DBs
NCBI-ProteinID:
QHJ12351
UniProt:
A0A857JMW4
LinkDB
All DBs
Position
2992254..2995040
Genome browser
AA seq
928 aa
AA seq
DB search
MSNSDPATTPVIPNNPFILVDGSSYLFRAFHGMPPLTNSKGLDTGAVYGVINMLRSLIKQ
FNPTHMAVVFDAKGKTFRDEIYTEYKANRPSMPEELRSQIAPLHKIIQAMGLPIIVESGV
EADDVIGTLADQASKLGIPTLISTGDKDMAQLVNEHVTLINTMNNQVMDPQGVVEKFGIP
PELVIDFLALKGDKVDNIPGVPGVGDKSALGLLQGIGSINDIYQNLDKIATLDFRGAKKM
ADKMREYEEQARLSYTLATIKLDVEMDCSPTSLSPTEPNYSELRDLFAELEFKRWLKEAT
DALSGNDQLSQADQSNDESTEQSDIKTNYHTILTQDALDDWLKKLNNAALFAFDTETTSL
NYMQAELVGMSFCIEEGEAAYLPLAHDYAEAPEQLDRDTVLALFKPLLEDKNKAKVGQHL
KYDKNVLANYDINLQGIAYDTMLESYVLDSVATRHDMDSLAQHYLGLSTVHFEDIAGKGA
KQLTFNQIPLEQAAHYAAEDADITLRLHKHIWKKLNQSPELASVLSEIEVPLATVLAKME
QFGVLIDSQRLGQQSQDLASRILQLENEVHTLAGEEFNLGSTKQLQEILFKKLDLPILKK
TPKGAPSTSEEVLQELALTYPLPKLLMEFRVLSKLKNTYTDKLPKMINPRSGRVHTSYHQ
AITATGRLSSTEPNLQNIPIRTEQGRRVRQAFIPRPGYKIVAADYSQIELRIMAHLSQDK
GLLKAFSQGKDIHTATAAEVFNVSLEEVTTEQRRNAKAINFGLIYGMSAFGLSKQLNVSR
QDAQHYMDIYFERYPGVLKYMEDARVVAKEKGYVSTVFGRRLYLPDINASNGLRRKGAER
AAINAPMQGTAADIIKKAMLKVDAWIDTLPNDQTRMIMQVHDELIFEIKEQNVESDKNTI
VELMEKAVSLDVPLIVEAGVGENWDEAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgagcaattctgatcccgctactacgcccgtcattcctaataacccatttatattggtt
gatggatcttcttatttgtttagggcttttcacggcatgccccctttaactaactctaaa
ggactggatactggcgcagtttatggtgtgataaacatgctgcgtagcctgatcaaacaa
tttaatcccacacatatggcggttgtctttgatgccaaaggcaaaacgtttcgagacgag
atctatacagaatataaagcgaaccgcccctcaatgcctgaggagctgcgcagtcaaatt
gcccctttgcataagatcattcaggcgatgggcttgcccattattgtagaatctggagtt
gaagctgatgatgtgatcggtaccttagccgatcaagctagtaaacttgggatccctacc
cttatcagcacaggcgacaaggacatggctcaactagttaatgagcatgttacgctcatt
aacaccatgaataaccaagtcatggatccacaaggcgtagtggaaaagtttggcatcccc
cctgaattggtaatcgatttcctggcgctaaaaggtgataaagttgacaacatcccaggt
gtcccaggtgtaggcgataaaagcgcgttaggtctgctgcaaggtattggtagcattaac
gatatttaccaaaacctcgacaaaatagccacgttggactttcgcggagccaagaaaatg
gctgataaaatgcgagagtatgaagaacaagctcgtctgtcatacacattagcaaccatc
aagcttgatgttgaaatggattgcagccccaccagcctttcaccaacagagcctaactat
agtgaactacgagacctattcgcagagctggaatttaaacgttggctgaaagaagcaact
gacgcactaagtggaaacgatcaactaagtcaagcagatcaaagtaatgacgagtcaaca
gaacaatcggatataaaaaccaattatcacactattttgacgcaagacgctctagatgat
tggttgaaaaagttaaataacgcagcgcttttcgcttttgataccgaaacgaccagctta
aattatatgcaagcagagctcgtcggtatgtcattttgtatcgaagaaggtgaagccgcc
tacctgcccctagctcacgattatgcagaagcaccagagcaattagatcgagacaccgtt
ttagccttatttaagcctttgttagaagacaagaataaagctaaggtcggacaacaccta
aagtatgataaaaatgtattagcgaattacgatattaatcttcaaggtatcgcttacgat
acgatgctcgaatcatatgtgcttgatagcgtcgcaacccgacatgatatggacagctta
gcgcagcattacttaggtctatcgaccgttcattttgaagatattgccggcaagggtgca
aaacaactaacatttaatcaaattccgttggagcaagccgcacattacgctgctgaagat
gccgatatcacattgaggctgcacaaacatatttggaaaaagctaaatcaatcaccagaa
ctagcatctgtgttaagcgaaattgaagtgcctttagcaaccgtactcgctaaaatggag
cagtttggcgtgttaattgatagccagagacttggtcaacaaagtcaggatcttgcctca
cggatccttcagctcgaaaacgaagttcacactttagcaggtgaagaatttaatctaggt
tcgacgaaacaactacaagaaatactgtttaagaagttagacctacccattttgaaaaag
acacccaaaggggctccatccacgtcagaagaagtgctacaagagttagcgcttacatac
ccactacctaaactattaatggagttcagggttctaagtaaattaaaaaacacctatacg
gataagctacctaaaatgataaacccgcgcagcggacgcgttcatacgtcatatcatcaa
gctattaccgcgacgggtagactatcgtctactgaacctaatttgcaaaatatcccgatt
agaacagagcaaggccgcagagtgcgtcaagcgtttattccacgtcctgggtataaaatc
gttgcggcagattattcgcaaattgaattgcggatcatggcacacctttcccaagataaa
gggctattaaaggcattttctcaaggtaaagatatccacaccgccaccgcagctgaagta
tttaacgtttccttagaagaggtaacgacagagcaaagacgcaatgccaaagccattaat
tttggtttaatttacggtatgtcagcattcgggctgtcgaaacagcttaatgtgtcacgc
caagatgcgcagcattatatggatatttactttgaacgctacccaggcgtgcttaagtac
atggaagacgcacgtgttgtggccaaagaaaaaggttacgtatcaaccgtatttggccgt
cgtctttatttacccgatatcaatgccagcaacgggttacgacgcaaaggtgccgagcga
gctgcaattaatgccccaatgcaaggtacagcggcagatatcatcaaaaaagcgatgtta
aaagttgacgcctggattgataccttgcccaatgatcaaactagaatgattatgcaagtt
cacgatgaacttatttttgaaataaaagaacaaaatgtcgaaagcgacaaaaatactatt
gttgaactgatggaaaaagcagtttccttagacgtgccgctaatagttgaggccggagta
ggtgaaaattgggacgaagcccactaa
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