Paraglaciecola mesophila: FX988_03080
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Entry
FX988_03080 CDS
T06389
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pmes
Paraglaciecola mesophila
Brite
KEGG Orthology (KO) [BR:
pmes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmes03021
]
FX988_03080
Transcription machinery [BR:
pmes03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
FX988_03080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
GIT_CC
Motif
Other DBs
NCBI-ProteinID:
QHJ12822
UniProt:
A0A857JN83
LinkDB
All DBs
Position
complement(3540475..3543306)
Genome browser
AA seq
943 aa
AA seq
DB search
MAQKHSFALGQRWLSDTQTELGLGTVVSVDNRAVSLLFPATGDSRVYAKQSAPLTRITFG
EGDNITSHEGWEMKITSVTEHNDMLTYTGVRHDTEEEVNLKETFIDHHFQLNQPEQRLFA
GQFDHPKWFDLREQCLNHQYSHSTSSLLGFVGARVDLIPHQLHIAAEVGRRFAPRVLLAD
EVGLGKTIEAALIIHQQLLTARAERVLIVVPSSLVHQWLVEMLRRVNLAFSIFDEERCSA
MSGESGNPFESEQLVICSLDFLTHNSRYYELAMQAPWDLMVVDEAHHLIWSEGQPSQEYQ
VVQGLAQVTKGVLLLTATPDQLGHESHFARLRLLDPARFHDYQSFVKEEQQYSTLAQAIS
PLMSGDALSPENISAIESFAKDEDLGDINGMSTRQKTQLLHTLLDRHGTGRLLFRNSRAG
VSGFPDRKLFTYSLEQPEEYITAQDEDPTNLALHLTPERNPDLVNSWFNLDPRVDWFIDK
LHELKGEKVLTICANAGTALQLAEVLRVKAGTRATVFHEGMGIVERDKAANYFAQTEEGA
QVLICSEIGSEGRNFQFAHHLVLFDLPQVPDLLEQRIGRLDRIGQTHDVCIHVPYFDMSA
QQVLLDWYHQGLNAFEQTCPTGMTVYEETQELLHSCLMFPTDFAASENLINQTASLHKQL
KERLEQGRDKLLELNSSGKGRVEKLQKEILAAEDSPTLELFMTRLFDTLGLAQEDKDESC
YILRPTETMVATLPGLDEEGMTITYERTTATRLEHVNFFSWDHPMVQHAMETVTTEITGK
SSVALGEDKSLPAGAYWLECLFVLSGKAEKSLQLDRFLPPTPIKICVDTTNSVIEKQFTK
LDKVRGKMGNQLIKALTPQLTKALAVAQNQGEQDAEKVRKQCQKQMKSLLGGELKRMQSL
QKVNPSIRDEEIEHLQQQIDDLKQVISDARVNLEAIRLIVNNP
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaaaacattcattcgcacttggtcaacgttggctaagcgatacccaaacagaa
cttggcttaggtacagtggtatcggttgataatcgtgcggtaagcctgttatttcctgct
accggagacagtcgagtttacgctaaacaaagcgcccctcttacgcgtattacatttggt
gagggcgacaatattaccagtcatgaaggctgggaaatgaaaatcactagcgtcaccgag
cataacgatatgctgacctatactggcgtgcgtcatgacaccgaagaagaagttaactta
aaagaaacctttattgaccatcactttcaactgaaccaacctgaacagcgcctatttgct
gggcagtttgaccacccaaaatggtttgatttacgtgagcagtgcttgaatcaccaatac
agccatagtacctcttcactattgggctttgtgggtgcccgcgttgacttgattccacat
cagttacacatagcagccgaagttggacgccgcttcgctccgcgagttttgctggctgat
gaagtgggtttgggtaaaaccattgaagctgcgttgattattcatcagcagttactgaca
gctcgcgctgaacgcgttttaattgttgtgccgtctagcttggtacatcaatggctagta
gaaatgttacgccgagttaatctggcattttcaatttttgatgaagaacgttgcagcgcc
atgtcaggcgaaagcggtaatccctttgaatctgaacaactggttatttgtagcctagat
tttttaacccacaacagccgctattacgaattggccatgcaagccccctgggatttaatg
gtggtcgatgaagctcatcaccttatttggagtgaagggcagccctcacaagaataccaa
gtcgttcaagggttagcccaagtcacaaaaggcgtgttgctattgaccgctacccctgat
cagttaggtcacgaaagccactttgcgcgcctacgcctgctggaccctgctcgttttcat
gattaccaaagctttgtcaaagaggagcaacagtacagcacattagcccaagcgatttcg
cccctgatgtcaggcgatgctctaagccctgaaaacatatccgcgattgaatcttttgcc
aaagacgaagacttgggtgatatcaatggcatgtccacaagacaaaaaacgcagttgtta
catactttgttagaccgccacggtacaggtcgtttgctgttccgcaatagccgagctggg
gtcagtggtttcccagatcgcaaattattcacctatagcctagagcagccagaagaatat
attaccgctcaagatgaagatccaaccaacttggcgttgcatctaactcctgaacgcaac
cctgacttggttaatagctggttcaacttagatccaagagtcgattggttcattgataaa
ctgcacgagcttaagggagaaaaagtactgacaatctgcgccaacgcagggacggcattg
cagctggcggaagtgttgagggtaaaagctgggacgcgcgcaactgtgtttcacgagggc
atggggatcgtagagcgcgataaagcagcaaattattttgcccaaactgaagaaggcgcc
caagtactcatttgtagcgaaataggcagtgaaggccgcaacttccagtttgctcatcac
ttggtattatttgatttacctcaagtgcctgatttgcttgagcagcgtatcggtcgtctt
gatcgtattggtcaaacccacgacgtatgtatccatgtgccttattttgatatgagtgct
caacaagttctgcttgattggtaccatcaagggctaaatgcctttgagcaaacctgcccc
acaggcatgacggtatacgaagaaacccaagagttgctacatagttgcttaatgttccct
acagattttgcggccagcgaaaacctgattaatcaaaccgctagcctgcacaagcaactc
aaagagcgtttagaacaaggtagagacaaactacttgagcttaattcatcgggcaaagga
cgagttgagaaattgcaaaaagaaatccttgcggctgaagactctcctacgcttgagtta
tttatgacccgcttgtttgacacactcggacttgctcaagaagacaaagatgaaagttgc
tacattttacgccccacagagaccatggtagcgacattaccagggcttgatgaagaaggc
atgacgattacgtacgaacgcaccaccgcaacccgtttagaacatgtgaatttcttcagc
tgggatcacccaatggtgcaacacgccatggaaaccgtcaccacagaaatcaccggcaaa
agctcagtggcattaggggaagacaaatccctaccagcaggggcgtattggctagaatgt
ttattcgtgctgtcaggcaaagcagaaaagtcactgcaacttgaccgcttcttgccaccg
acaccaattaaaatctgtgttgataccactaatagcgtcatcgaaaagcaatttaccaag
ctagacaaagtgcgcggcaaaatgggtaatcaactgatcaaagccttaacgccccagttg
accaaagcgttagcggttgcacaaaaccaaggcgagcaagatgctgaaaaggtacgtaag
caatgccaaaagcaaatgaagtcgttgcttggcggtgaattaaaacgtatgcaaagttta
caaaaagtgaacccatcaattcgtgatgaagaaattgagcaccttcaacaacaaattgac
gacttgaagcaggttattagtgacgcaagggttaacctagaagccatcagattgatagtc
aacaacccttaa
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