Phototrophicus methaneseepsis: G4Y79_03650
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Entry
G4Y79_03650 CDS
T07940
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmet
Phototrophicus methaneseepsis
Pathway
pmet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G4Y79_03650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmet03019
]
G4Y79_03650
Enzymes [BR:
pmet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G4Y79_03650
Messenger RNA biogenesis [BR:
pmet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G4Y79_03650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Utp25_C
NAD_binding_3
Phage_integrase
RhlB
Motif
Other DBs
NCBI-ProteinID:
QPC83489
UniProt:
A0A7S8IFH3
LinkDB
All DBs
Position
complement(834945..836294)
Genome browser
AA seq
449 aa
AA seq
DB search
MQFKDLNLIDPLLRAVREAGYDEPTPIQAQAIPHILAGKDLIGSAQTGTGKTAAFSLPIL
QLLYNKRVKNKQRPIRALILSPTRELSLQIGDNIATYGKFTRLRHTVIFGGVSQNRQVRD
LERGVDVVVATPGRLLDLMQQGYVNLNEVEFFVLDEADRMLDMGFINDMRRVIKELPEKR
QSLLFSATMPQEIQDLASQMLRNPIMVEVTPQSTTVDKIDQSVFFVNKNDKRDLLIHILR
DDQSISRALVFTRTKHGADRLVQKLDQSRIRAEAIHGNKTQNARQKALSNFKAGKTRVLV
ATDIASRGIDVDDVTHVINFDLPNETESYVHRIGRTARAGAEGIAYSFCDASERQYLKDI
EKLIRLSVPVIEDHPYAEAAQAAYEEARQLSANNSRNRNNRRRRSGGSRSQNGGNRQNSG
GNDGRNRNRRSRNRSEQRSGNRASQPQSE
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcaaagatttgaacttgattgaccccttgctgcgtgctgtgcgcgaagcaggc
tacgatgagccgacgccgatccaggcccaggcaatcccgcatatcctggcgggtaaggac
ctgattggtagtgcacagacaggcacgggtaagacggcggctttctcgctgccgattttg
cagttgctctacaacaaacgtgtcaaaaacaagcagcgtcctatccgggcgttgattctc
tccccaacgcgggaactttccttacagattggcgataacatcgccacttacggcaaattc
acgcgcttgcgccatacagtgatctttggtggcgtcagccagaaccgccaggtgcgcgac
ctggaacgcggtgttgatgtcgtcgtcgcgacaccgggccgcctgttggacctgatgcag
cagggctatgtcaacctgaacgaagtcgaattctttgttctggatgaagcggatcgtatg
ctggatatgggctttatcaatgacatgcgccgcgtcatcaaagaactgccggaaaagcgg
cagtcactgctgttttccgcgacgatgccgcaggaaatccaggatttagccagccagatg
ctgcgtaatccgatcatggttgaggtcacaccacagtccacgacagtcgataagattgat
cagtctgtgttcttcgtgaacaagaacgataagcgtgacctgttgattcacattctgcgc
gatgaccaatccatcagccgtgcgttggtctttacacgcaccaagcatggtgccgaccgc
ctcgtgcagaagctggaccaatctcgtatccgtgcagaagcgatccatggcaataaaacc
cagaatgcgcgccagaaagccctttcgaacttcaaagcaggcaagacgcgcgtcctcgtt
gcgacagatattgcttctcgtgggattgatgtcgatgatgtgacccatgtcattaacttc
gacctgcccaacgaaaccgagagctacgtccatcgcattggtcgtacggctcgtgcgggt
gctgaaggtatcgcttattcattctgtgatgcctctgaacggcagtatctcaaagatatt
gaaaagctcattcgtctgagcgttcccgtcattgaggaccatccctatgcagaagctgca
caggccgcttatgaagaagctcgccaactgagcgccaataacagccgcaatcgcaacaat
cgccgccgccgtagtggtggcagccgtagccagaatggtggcaatcgtcagaatagcggt
ggcaatgacgggcgtaaccgtaatcgccgcagccgcaaccgctcagagcagcgttccggg
aatcgtgcctcacagccccagagcgaataa
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