Phototrophicus methaneseepsis: G4Y79_03960
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Entry
G4Y79_03960 CDS
T07940
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
pmet
Phototrophicus methaneseepsis
Pathway
pmet03030
DNA replication
pmet03430
Mismatch repair
pmet03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G4Y79_03960 (holB)
03430 Mismatch repair
G4Y79_03960 (holB)
03440 Homologous recombination
G4Y79_03960 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmet03032
]
G4Y79_03960 (holB)
03400 DNA repair and recombination proteins [BR:
pmet03400
]
G4Y79_03960 (holB)
Enzymes [BR:
pmet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
G4Y79_03960 (holB)
DNA replication proteins [BR:
pmet03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
G4Y79_03960 (holB)
DNA repair and recombination proteins [BR:
pmet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
G4Y79_03960 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA_5
DNA_pol3_delta
Motif
Other DBs
NCBI-ProteinID:
QPC83548
UniProt:
A0A7S8IG31
LinkDB
All DBs
Position
complement(900899..901909)
Genome browser
AA seq
336 aa
AA seq
DB search
MMNDRALNPWPVYGHDWAVTFLQKSLAHHRIRHAYLFLGPENIGKRQLAHAFAMALMCEN
EDEFARPCMQCASCKRILSGNHPDMLYSQADDNTGALRIDAIRDVMRLIALKPFSSSYRI
AIFEDFDNARPQAQDALLKTLEEPPPHAVIILLAQSTEHIMSTITSRCQVLRLRPASTDT
VQEVLRIQGATDEQADLIGRLSNGRIGWALEALHDEAVLADRDQMLTMLYEAIMGNRAAR
FAVADELAKLPKQSVRYILETWQTYWRDLLLLSENSPVKPCNSDRRAELEQIVVRLQPEA
ALHALQATRELLLKTLNTNANVRLALEAMFLDYPHL
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatgatcgcgctctcaatccctggcccgtctacgggcacgactgggctgtgacc
ttcttacagaagagcctggcccatcaccgcatccgtcatgcttacctgttcctggggcct
gaaaatattggtaagcgccaactggcgcatgcctttgccatggcgctgatgtgcgaaaat
gaggatgaattcgcccggccctgtatgcagtgtgcctcctgtaagcgcatcctcagcggc
aatcacccggatatgctctacagtcaggcggatgacaatacaggtgcgctcaggattgat
gccatccgcgatgtgatgcgcttgatcgcgctcaagcccttctcatcgagctatcgcatt
gccatcttcgaagacttcgacaatgcgcgcccccaggcgcaggatgcgctgctcaagaca
ttagaagagccaccgccccatgccgtgattatcctgctagctcaatccaccgagcatatc
atgtcgacaatcaccagccgctgccaggtactccgactgcgcccggcctcgacagatacg
gtgcaggaagtgctcaggatacaaggggcgacagatgagcaagctgatttgattggtcgg
ctcagcaatgggcgcatcggatgggcgctagaagccttgcacgatgaagccgtattagca
gaccgcgatcaaatgctgaccatgctctatgaagccatcatgggcaatagggccgcacgt
tttgccgtcgcagatgaactggcaaagctgccgaagcaatctgtccgctatattctggaa
acatggcagacgtattggcgtgacctgctgctgctctcagaaaatagcccggtcaagcct
tgtaacagcgaccgtcgcgcagagctggagcaaatcgtggtgcgcttacagccagaagcc
gccctgcatgccctacaggccacgcgtgaattgctactaaaaacgctcaacaccaatgcc
aatgtgcgtctggcgcttgaagcgatgtttttagattatccgcatctttag
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