Phototrophicus methaneseepsis: G4Y79_11100
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Entry
G4Y79_11100 CDS
T07940
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
pmet
Phototrophicus methaneseepsis
Brite
KEGG Orthology (KO) [BR:
pmet00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G4Y79_11100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmet03021
]
G4Y79_11100
Transcription machinery [BR:
pmet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G4Y79_11100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HTH_28
Sigma70_r4_2
PgaD
Motif
Other DBs
NCBI-ProteinID:
QPC84887
UniProt:
A0A7S8EDD0
LinkDB
All DBs
Position
2571362..2572528
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AA seq
388 aa
AA seq
DB search
MIQELINRADQRGYLTYDDVIEVLEEDNDDLVSLETILYELDEMGIELQKEGEDNTLPSS
EEDLSADYNINELVQDPEIGDITAISSDDPVGLYFRQMAQEPLLNAQEEIDLAKRIERGK
KAQERLQYPDAKDRSERWYRHMERIMYDGQLAREHLGRANTRLVVSIAKRYMGQGLPFPD
LIQEGNVGLMRAVDKYDYRRGNRFSTYATWWIRQAITRALAQKTRTIRIPLHMTERIRQM
YRIAQSLEQQMGRRPAVEEIAAEMDLPADTIRGMMDASQHAIALERPVGDDGDSEFGDFI
EDQDTPSPVESATQHLLEETIEEVLSELTPRQSHILRLRFGLGGGEPHTLEEIANKFGLS
RERIRQLEKEALRRLRHPRLAHNLRDYL
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
gtgattcaggaactcattaaccgagcggatcaacgtggctacctaacgtatgatgatgtg
atcgaagttctggaagaggacaacgatgacctcgtctcattagaaaccatactttatgag
ttggacgagatgggtatagagcttcaaaaagaaggtgaggacaatacactgccatcttca
gaagaagatctatctgctgattacaatattaacgaactcgttcaagatccagaaatcggt
gacattaccgctatatcctccgacgaccccgttgggttgtacttccgccagatggcgcaa
gaacctctcttaaatgcccaggaagaaattgaccttgctaagcgtattgagcgcggcaag
aaagcccaggaacgcctgcaataccccgatgcaaaagatcgcagcgaacgctggtatcgt
catatggaacgcattatgtatgacggacaactggctcgcgagcatcttgggcgggcaaat
acacgcctcgttgtgagtatcgccaagcgctatatgggccagggattgcccttcccagat
ttgatccaggaaggcaatgttggcttgatgcgtgcagtcgataaatatgattatcggcgt
gggaatcgcttcagtacgtatgcaacatggtggattcgtcaggcgattacgcgggccctg
gcccagaaaacgcgcaccatccgcattccgctgcatatgacggagcgtatccgccagatg
tatcgtattgcgcagagccttgaacagcaaatgggacgccgcccagccgttgaagaaatc
gctgctgagatggacctcccggcggataccatccgggggatgatggatgccagccagcac
gcgattgcgctggaacggcccgtcggcgatgatggcgacagtgaatttggcgatttcatt
gaagatcaagatacccccagccccgtagaatccgcaacacaacacctgcttgaagaaaca
atcgaagaagttctgagtgaactgaccccacgccagagccatattttgcggctgcgtttc
ggcctgggcgggggcgaacctcacacattagaagagattgcgaacaagtttgggctttct
cgggagcgtattcgtcaattagagaaagaagcattgcgtcgtctgcgccatccgcgcctg
gcacacaatttgcgggattatctctaa
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