Phototrophicus methaneseepsis: G4Y79_14155
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Entry
G4Y79_14155 CDS
T07940
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmet
Phototrophicus methaneseepsis
Brite
KEGG Orthology (KO) [BR:
pmet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmet03032
]
G4Y79_14155 (topA)
03400 DNA repair and recombination proteins [BR:
pmet03400
]
G4Y79_14155 (topA)
Enzymes [BR:
pmet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
G4Y79_14155 (topA)
DNA replication proteins [BR:
pmet03032
]
Prokaryotic type
DNA Topoisomerases
G4Y79_14155 (topA)
DNA repair and recombination proteins [BR:
pmet03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
G4Y79_14155 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF5679
Toprim_4
Toprim_3
NLPC_P60
Zn_ribbon_GRF
DUF7479
Motif
Other DBs
NCBI-ProteinID:
QPC80850
UniProt:
A0A7S8IBU5
LinkDB
All DBs
Position
complement(3278495..3280840)
Genome browser
AA seq
781 aa
AA seq
DB search
MSDPMRGYCMKCKEKRDMIEPQATYTKSGVPATTGKCAVCGTKIFVMGETPAHANVPKPE
VIERPKKTKKKAKKGAKKAKSTRSKKVGKLVIVESPAKARSIGSYLGDGYTVMASKGHVR
DLLVTQLSVDVENDFEPKYRVPNDKRQTVKQIKQAVEGAEEVYLATDPDREGEAIAWHLA
EAIGMDDTQAQRVTFNEITRDAVRESFDSARNIDMDLVNAQQARRVLDRLVGYNITELLW
DKVRNRLSAGRVQSIALRLVVDREEEIEAFNPEEYWTIEAELAKQSTNGHQPESFVARLA
KINGDDVNLTSDSEVQPHVDILEKSQYLITDVKIGTRRRKPSAPFTTSTLQQEASRRLGF
NARRTMRAAQSLYEGVELDNGEIVGLITYMRTDSLNISAQAQQEARNYIVENFGKEYAPE
KVRNYKTKAKGAQEAHEAIRPTSVLRAPLEIKKALQGAGRDLFKLYQLIWERFVSSQMSN
AVYDTVRAEISAGLNTNDMPYLFRASGSRIRFKGFLAVYEESRDEDAPQITDDRMLPELL
ADELLNLVQLLPQQHFTQPPPRYTEASLVRTLEELGIGRPSTYAPTVAVIQDRDYVTKED
KRLVPTDTGKVVSDLLVKFFAEEMDYQFTARLEDQLDEISQGGTEWQPFMHDFYEPFSVR
LQNARSNMPQMKQEELVGRKCPTCGTGDLVIKYGRWGKFIGCSNYPECRHTEQYLEYIGV
PCPVCGEEHGGEVVELKSRRGRTFYGCSRYPDCDYRSWNRPGSDQEQEATEDKEAVHEEA
S
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatccgatgcgcggttattgcatgaagtgcaaagaaaagcgcgacatgatagaa
ccgcaagcaacctacaccaaatccggtgtgccggcgactacggggaaatgtgccgtctgc
ggcacgaagattttcgtcatgggcgaaacacctgcccacgccaatgtccccaagccggaa
gtcatagaacgccccaaaaagaccaagaaaaaggccaaaaagggggctaaaaaagcaaag
agtacgcggagcaagaaggtcggtaagctcgtcatcgtcgagtccccggctaaggcgcgc
agcattggcagctacctgggtgatggctatactgtaatggcatccaaaggtcacgtcagg
gacctgttggtgacgcagctttcggtcgatgtcgaaaatgacttcgaaccgaaataccgc
gttccgaatgacaaacgccagaccgtgaagcagattaagcaggctgtcgaaggggctgaa
gaagtctatctggcgacggaccctgaccgcgaaggcgaagcgattgcatggcatctcgca
gaagccatcgggatggacgatactcaggcacagcgcgttacctttaatgaaatcacccgt
gacgccgtgcgtgaatcattcgacagcgcccgcaatatcgacatggacctcgtgaatgcc
cagcaggcacgccgtgtattagatcgccttgtcggttacaacattacagaattgctgtgg
gataaggtacggaatcggctttcggctggtcgtgtacagagtatcgcgctacgcctggtc
gtggaccgagaagaagaaatcgaagccttcaatccagaagaatactggacgattgaagct
gaactcgctaagcagagcacaaacggccaccagccagaaagctttgtggcgcgactcgcc
aagattaatggtgacgatgtcaacctcacaagcgactcagaggttcaaccgcatgttgac
atcctcgaaaagagccagtatctcattacggatgtcaaaatcggcacgcgccgccgtaaa
ccatctgcgccatttaccaccagtacgctccaacaggaagcatctcgccgcttagggttc
aatgcacgtcgcacgatgcgcgccgcacaaagcctttacgaaggcgttgaactggataat
ggcgaaatcgtgggtctgattacgtacatgcgtactgacagcttgaacatctcagcacag
gcacaacaagaagcgcgtaactatattgttgagaacttcggcaaggaatacgcaccggaa
aaagtgcgtaattacaagacgaaggcaaagggagcgcaggaagcacacgaagctatccgt
ccaaccagcgtgctgcgtgcaccgctggagatcaagaaagcattgcagggcgcaggtcgc
gatctatttaagctctatcaactgatctgggaacgcttcgtctctagccagatgtcaaat
gcagtctatgacaccgtacgagcagaaatcagcgcagggctcaacacaaatgatatgccc
tacctgttccgcgcatccggcagccgtattcgcttcaagggcttcctggcagtatatgag
gaaagccgtgatgaagacgcgccacagatcacagatgaccgcatgttgccggagctactt
gctgatgaactgctgaatctggttcagctcttgccacagcagcactttacccagccacca
ccacgctatacagaagcatcattggtgcgcaccctggaagaactcggcattggtcgccca
agtacctatgcgccaacagtagccgttatccaggaccgggattacgtcacaaaggaagat
aagcgactcgtcccgacagacacgggtaaagtcgtgagcgacctactggtcaagtttttc
gcggaggaaatggattaccagttcaccgcgcggctggaagaccagctagatgagatttct
cagggtggcactgagtggcaaccgttcatgcatgacttctatgagccattctctgtgcgt
ttgcaaaacgcccgcagcaatatgcctcagatgaagcaagaagaactggttggccgcaaa
tgcccgacctgtggtactggcgatctggtgatcaaatatggtcgctggggcaagttcatt
gggtgcagcaattaccctgaatgccgccatacggagcaatatctggagtatattggcgtt
ccctgccccgtttgtggtgaggaacatggcggcgaagtcgtggaacttaaatcgcgccgt
ggccgcacattctatggttgctcacgctatcctgactgcgattatcgctcctggaaccgc
cccggcagtgaccaggaacaagaagctacagaagacaaagaggccgtacacgaagaagcc
tcttaa
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