Pseudoxanthomonas mexicana: H4W19_00285
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Entry
H4W19_00285 CDS
T06805
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmex
Pseudoxanthomonas mexicana
Pathway
pmex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4W19_00285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmex03019
]
H4W19_00285
03009 Ribosome biogenesis [BR:
pmex03009
]
H4W19_00285
Enzymes [BR:
pmex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H4W19_00285
Messenger RNA biogenesis [BR:
pmex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H4W19_00285
Ribosome biogenesis [BR:
pmex03009
]
Prokaryotic type
rRNA helicases
H4W19_00285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
adh_short
UvrA_inter
DUF6702
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QND80294
LinkDB
All DBs
Position
59551..61461
Genome browser
AA seq
636 aa
AA seq
DB search
MSTESPSPAPLLFADLGLSAPVMAAVTAVGYESPSPIQAATIPAMLAGRDVLGTAQTGTG
KTAAFALPVLSNIDLNAERPQALVLAPTRELAIQVAEAFQKYATKVPGFHVLPIYGGQSY
YPQLQALKRGVHVVVGTPGRVIDHLERGSLDLSGLTTLVLDEADEMLRMGFIDDVETVLK
KTPETRQVALFSATMPPAIRRIAQTYLKQPVEVTIAAKTTTSANIRQRYWWVSGMHKLDA
LTRILEVEPFDGMIVFARTKAATEELADKLQARGLAAAAINGDMQQAAREKTIQQLKDGK
LDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKG
MLRAIERATRQPIEEMQLPSVEAVNDRRVEKFLARITDTLASGRAGEFRALIERYEREQN
VPAVDIAAALAQLVQGDTPLLLSQERTPREARPARSETYGNAPRREREERPRRDDGHGER
PARSVDKPERSKIERPDTDRPRADKPPRSDKPEVGMETYRIEVGHMHGVKPANIVGAIAN
EAGLESRYIGRIDIQHDHTTLDLPEGMPREVLMHLKKVWVSGQQLRIHKPGEGGGEAPPR
RFGGPGAGKGKPRGDKPFGAGKPGPRPHRKGPPREG
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaatccccttctcccgcccccctgctgttcgccgatctcggcctgtccgcg
ccggtcatggccgccgtcaccgcggtgggctacgaaagcccgtcgccgatccaggcggcc
accattcccgccatgctggccggccgcgacgtgctgggcacggcgcagaccggtaccggc
aagaccgccgcgttcgcgctgccggtgctgtcgaacatcgatctgaatgccgagcgcccg
caggcgctggtgctggcgcccacgcgcgagctggccatccaggtggccgaggcgttccag
aagtacgcgacgaaggtcccggggttccacgtgctgccgatctacggcggccagagctac
tacccgcagctgcaggcgctgaagcgtggcgtgcatgtcgtcgtcggcacgcccggccgc
gtgatcgaccatctggagcgcggctcgctggacctgtccggcctgaccacgctggtgctg
gacgaggccgatgaaatgctacgcatgggcttcatcgacgatgtcgagaccgtgctgaaa
aagaccccggaaacgcgccaggtggcgctgttctcggcgaccatgccgccggcgatccgg
cgcatcgcccagacctacctgaagcagccggtggaagtcaccatcgcggccaagaccacc
acctcggccaacatccgccagcgctactggtgggtgagcggcatgcacaagctggatgcg
ctgacccgcatcctggaagtggaaccgttcgatggcatgatcgtcttcgcccgcaccaag
gcggcgaccgaagaactggccgacaagctgcaggcgcggggactggcggccgccgcgatc
aacggcgacatgcagcaggcggcgcgcgagaagaccatccagcagctcaaggacggcaag
ctggacatcctggtggccaccgacgtggccgcgcgcggcctggacgttgagcggatcagc
cacgtgctgaactacgacatcccgtacgacaccgagagctacgtgcaccgcatcggccgc
accggccgtgccggccgcacgggcgacgccatcctgttcgtcaccccgcgcgagaagggc
atgctgcgcgcgatcgagcgcgccacgcgccagccgatcgaagagatgcagttgcccagc
gtggaagcggtgaacgaccgtcgcgtggagaagttcctggcgcgcatcaccgacacgctg
gcctccggcagggcgggcgagttccgcgcgctgatcgagcgttacgagcgcgagcagaac
gtgccggcggtggacatcgccgccgcgctggcgcagctggtgcagggcgatacgccgctg
cttctctcgcaggagcgcacgccgcgtgaggcgcgcccggcgcgcagcgagacctatggc
aacgcgccccgtcgtgagcgcgaggagcggccacgccgtgacgacggccatggcgagcgt
ccggcacgcagtgtcgacaagcccgagcgttcgaagatcgaacgccccgacaccgaccgt
ccgcgcgccgacaagccgccgcgcagcgacaagcccgaggtgggcatggagacctaccgc
atcgaggtgggccacatgcacggagtgaagcccgccaacatcgtcggcgccatcgccaac
gaggcggggctggaaagccgctacatcggccgcatcgacatccagcacgaccacaccacg
ctggacctgcccgagggcatgccgcgcgaggtgctgatgcacctgaagaaggtctgggtg
tccggccagcagctgcgcatccacaagccgggcgaggggggcggtgaggcgccgcctcgc
cgcttcggcggccctggcgccggcaagggcaagccgcggggcgacaagccgttcggcgcc
ggcaagcccggccccaggccgcatcgcaagggccctccgcgcgagggatga
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