Pseudoxanthomonas mexicana: H4W19_05085
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Entry
H4W19_05085 CDS
T06805
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmex
Pseudoxanthomonas mexicana
Pathway
pmex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4W19_05085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmex03019
]
H4W19_05085
03009 Ribosome biogenesis [BR:
pmex03009
]
H4W19_05085
Enzymes [BR:
pmex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H4W19_05085
Messenger RNA biogenesis [BR:
pmex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H4W19_05085
Ribosome biogenesis [BR:
pmex03009
]
Prokaryotic type
rRNA processing factors
H4W19_05085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
QND81151
UniProt:
A0ABX6RF34
LinkDB
All DBs
Position
1056223..1059354
Genome browser
AA seq
1043 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GADRHGFLPLKEISRDYFQAGVDHNKAGIRELLKEGQEVVVQVDKDERGNKGAALTTFIS
LAGRYMVLMPNSPTAGGVSRRIEGDDRAELKKAMDALQIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLSVWKAIAEAALTKPAPFLIYQESRLIVRALRDYLRSDVGEILVDTDELYETAR
EFMQQVMPHNLRKLKAYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAI
DVNSARATKGGDIEETAFHTNLEAAEEVARQLRLRDLGGLVVIDFIDMSSNKHQREVENK
LQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCEGHGRMRSVESLSLS
IIRVAEEHAMKDNTGQVLIQAPLEIANFLLNEKRGALREIEQRHDAPIIIVADEALHTPH
YEVTRIRQNELGEETSKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTHVKHTQPAPVREE
REVPAPAPAPAPVAPPVAVAAPASGGVVGFLKRLFGGGEATAPAPQARPQQDNRQRNDRS
ERNGRRDNRDNRGQQNQGRGGKQEGNRREERNKGQNAQAGNAPQQKPRNEQPQGQKQQKP
QGGQQPKAPKQPQAQQGGKQAPQDNPGQRQQAPRGPQQDAAAKPVAAEAVTTAAIVVATT
DEAVRTVPPAAIGSPISDAPATELDATPAATVEGDATPSADAGENGEGSRRRRGRRGGRR
RRRGNGEAGATGEDGLIADDLGSDDDTPVADRSQPEFDFEDDEPAAGAPRAQKAQPSAPA
LAAAAPVAAAVVAAQAPAMAPAADAAPVQAPSPVAVEATHAVEVIEDVKAEAARARPEVV
ATVQQEVPAAVAIVQTVKTEIAAEPAPAIEQPAAPVATAAEDVSPVAAVVRTEPVQIDLV
DAVNEATADTEAAVEAVTPTPAPAAPKPVSTPTTGSLFFVADADTPPSITRSLFEPAVTP
VKPADDIAQGDKQDDDTTEERSA
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgatcaacgccacgcaggccgaagagctgcgcgtggccatcgtcgac
ggtcagaccctgtacgacatcgatatcgaacagccgtcgaaggaacagaagaagtccaac
atctacaagggccgcatcacccggctcgagccctccctggaagccgccttcgtcgactat
ggtgccgaccgccatggcttcctgccgctgaaggaaatctcccgcgactacttccaggcc
ggcgtcgaccacaacaaggccggcatccgcgaactgctgaaggaaggccaggaagtcgtc
gtccaggtggacaaggacgaacgcggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgcccaactcgcccaccgccggcggcgtgtcgcgc
cggatcgagggcgacgaccgggccgagctgaagaaggcgatggacgccctgcagatcccg
gacgacatgggcgtgatcatccgtaccgccggcgtcggccgcgacgccgaagagctgcag
tgggacctggattacctgctgagcgtgtggaaggccatcgccgaagcggcgctgaccaag
ccggccccgttcctgatctaccaggaaagccgcctgatcgtgcgcgcccttcgcgactac
ctgcgcagcgacgtgggcgagatcctggtcgacaccgacgaactgtacgaaaccgcccgc
gagttcatgcagcaggtcatgccgcacaacctgcgcaagctgaaggcgtacaaggacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaaggcgcgtacgaacgcaac
gtgcgcctgccctccggcggctccatcgtggtcgaccagaccgaggcgctgaccgccatc
gacgtcaactcggcgcgcgccaccaagggcggcgacatcgaggaaaccgcgttccacacc
aacctggaagcggccgaggaagtggcccgccagctgcgcctgcgcgacctgggcggcctg
gtggtcatcgacttcatcgacatgtcctcgaacaagcatcagcgcgaagtcgagaacaag
ctgcagaacgcgctgaagtacgaccgtgcccgcgtgcagatcggccgcatctcgcgcttc
ggcctgctggaaatgagccgccagcgcctgcgcccgtcgctgggcgaatccagccagatc
gtctgcccgcgctgcgaaggccatggccgcatgcgcagcgtcgaatcgctgtcgctgtcg
atcatccgggtggccgaagagcacgcgatgaaggacaacaccggacaggtgctgatccag
gcgccgctggagatcgccaacttcctgctcaacgagaagcgcggcgccctgcgcgagatc
gagcagcgccacgatgcccccatcatcatcgtcgccgacgaagccctgcataccccgcat
tacgaagtcacccgcatccgccagaacgaactgggcgaagagaccagcaagcccagctac
cagcgcggtacgccgcgcaagttgccggtgcacgcgctgaccaaggcgcagctgaacatc
ccggccgcgccggcggtgacgcacgtcaagcacacccagcctgccccggtgcgcgaggaa
cgcgaagtgccggcaccggcgcccgcaccggcgcccgtggcaccgcccgtcgccgtcgcg
gcgcccgcctccggcggcgtggtcggcttcctcaagcgcctgttcggcggcggtgaagcc
accgcgccggccccgcaggcgcgtccgcagcaggacaaccgccagcgcaacgatcgcagt
gagcgcaacggccgtcgtgacaaccgcgacaaccgcggccagcagaaccagggccgtggc
ggcaagcaggaaggcaaccgtcgcgaggagcgcaacaagggccagaacgcccaggccggc
aatgcgccgcagcagaagccgcgcaacgagcagccgcagggccagaagcagcagaagccg
cagggcggccagcagcccaaggcgcccaagcagccgcaggcccagcagggcggcaaacaa
gcgccgcaggacaatccgggccagcgtcagcaggcgccgcgcggaccacagcaggatgcc
gccgccaagcccgttgccgccgaagcggtgacgacggccgccatcgtggtcgccaccacg
gatgaagccgtgcgcaccgtcccgcccgctgccatcgggtcgccgatctccgacgcacct
gccaccgagctcgacgcaaccccggcagccacggtcgagggcgacgcaacgccgtccgcc
gacgcgggcgagaatggcgaaggcagtcgccgccgccgtggtcgtcgtggtggccgccgc
cgccgccgtggcaacggtgaagccggtgccacgggcgaggacggcctgatcgccgacgat
ctgggcagcgatgacgacacgcctgtcgccgaccgttcgcaaccggagttcgacttcgaa
gacgacgaaccggcggccggcgcaccgcgtgcgcagaaggcgcagccctccgctcccgcc
ctcgcggcggccgcacccgtcgcggctgccgtggtcgctgcgcaggcaccggcgatggcg
cccgccgcggacgcggcaccggtgcaggcgccctcgcctgtcgccgtcgaagccacccac
gccgtcgaggtcatcgaagacgtgaaggccgaagcggcccgtgcccgccccgaggtggtc
gccaccgtgcagcaggaagtgcctgccgcagtcgccatcgtccagacggtcaagaccgag
atcgccgccgagccggcacccgcgatcgaacagcccgccgcaccggttgccaccgccgcg
gaagacgtgtccccggtggccgccgtcgtgcgcaccgagccggtgcagatcgacctggtc
gacgcggtcaacgaagcgaccgccgataccgaggcggcggtcgaagccgtcacgccgacg
cccgccccggccgcaccgaagccggtcagcacgccgaccaccggctcgttgttcttcgtc
gccgatgcggacacgccgccgtccatcacccgcagcctgttcgagcccgccgtcacgccg
gtcaagcccgccgacgacatcgcccagggcgacaagcaggacgacgacaccaccgaagaa
cgcagcgcctga
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