Pseudoxanthomonas mexicana: H4W19_07025
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Entry
H4W19_07025 CDS
T06805
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
pmex
Pseudoxanthomonas mexicana
Pathway
pmex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4W19_07025 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmex03019
]
H4W19_07025 (pcnB)
Enzymes [BR:
pmex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
H4W19_07025 (pcnB)
Messenger RNA biogenesis [BR:
pmex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H4W19_07025 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
FXR_C1
Motif
Other DBs
NCBI-ProteinID:
QND82018
LinkDB
All DBs
Position
complement(1473814..1475160)
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AA seq
448 aa
AA seq
DB search
MHGTATITPSTALRTIPRDQHTISRKDISPNALRVLYRLRDAGFQAYLVGGAVRDLLVGG
HPKDFDVATDATPEQVRQQFRNCRLIGRRFRLAHVVFGREIIEVATFRANVDDGSGDREM
DNGRLVRDNVYGTVEDDAVRRDFTANALYYAIDDFSVRDYVGGFEDTMARRLKLIGDPEQ
RYREDPVRMLRAVRLAAKLNFEIDADTAAPIAPLAPLLAEAAPARLFEEILKLFLSGHSV
ASFEGLERFGLLKVLFPETAAALASNRSGALRRMVLAGLAGTDQRVANDEPVSPAFLFAL
LLWPAYCRALMGLQAQGVHAEEAQRRAADRVTLHQLNTVALPRRFSLPMQEIWLLQTRFG
NRQRKRVMRLLSHPRFRAAFDFLVLRLAASPEHAEDVAFWREAQTQSGEELAVALGVAPA
ADAIIDEDAPPSKRRRRRRRRSTAASPE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
ctgcatggaaccgccactattacgccgtccaccgctctgcgaaccatcccgcgcgaccag
cacaccatctcgcgcaaggacatcagccctaacgcgctgcgcgtgctctaccgcctgcgg
gacgccggtttccaggcctatctggtcggcggcgccgtgcgggacctgctggtcggcggc
caccccaaggatttcgacgtggccaccgacgccacgcccgagcaggtgcgccagcagttc
cgcaactgccgcctgatcggccgccgcttccgcctggcgcatgtggtgttcgggcgcgag
atcatcgaggtggccaccttccgcgccaacgtcgacgacggcagcggcgaccgcgagatg
gacaacggccggctagtgcgcgacaacgtctacggcaccgtggaggacgacgcggtgcgc
cgcgacttcaccgccaacgcgctgtactacgccatcgacgatttctcggtgcgcgactac
gtcggcggcttcgaggacacgatggcgcggcggctcaagctgatcggcgaccccgaacag
cgctaccgcgaggatccggtgcggatgctgcgcgcagtgcggctggccgcgaagctgaac
ttcgagatcgacgccgatactgcagcaccgatcgcgccgctggcgccgctgctggccgaa
gccgcgccggcccgcctgttcgaagagatcctgaaactgttcctgtccgggcacagcgtg
gccagcttcgaagggcttgagcgcttcggtttgctgaaggtgctgttccccgagacggcg
gcggcgctggcctccaaccgcagtggcgcattgcgccggatggtgctggcggggctggcc
ggcaccgatcagcgcgtggccaacgacgagccggtgtcgcccgcgttcctgttcgccctg
ctgctgtggccggcctactgccgcgcgctgatgggcctgcaggcgcagggcgtgcatgcc
gaggaggcgcagcgccgcgcggccgaccgcgtcaccctgcatcagttgaataccgtggcg
ctgccgcgccgcttctcgctgccgatgcaggagatctggctgctgcagacccgcttcggc
aaccgccagcgcaagcgggtgatgcgcctgctgtcgcatccgcgcttccgggccgccttc
gacttcctggtgctgcggctcgcagcttcgcccgagcacgccgaggacgtggcgttctgg
cgcgaggcacagacccagtcaggcgaggaactggcggtcgcgctcggcgtcgccccggca
gccgatgcgatcatcgacgaggacgcaccgccttccaagcgtcgccgtcgccgccgtcgc
cgcagcacggccgcgtcgccggaatga
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