Pseudoxanthomonas mexicana: H4W19_11715
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Entry
H4W19_11715 CDS
T06805
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pmex
Pseudoxanthomonas mexicana
Brite
KEGG Orthology (KO) [BR:
pmex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmex03016
]
H4W19_11715
Enzymes [BR:
pmex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H4W19_11715
Transfer RNA biogenesis [BR:
pmex03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H4W19_11715
Prokaryotic type
tRNA splicing ligases
H4W19_11715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QND79038
UniProt:
A0ABX6R756
LinkDB
All DBs
Position
2450401..2451624
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AA seq
407 aa
AA seq
DB search
MNTQTHFELLHAEGSTTPIKGWVRGVPLDQGAHEQLRNIAAIPFVGPWVAVMPDVHLGKG
ATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRAKDLPDNLAQLRSSIERSVPVGNGRG
GEHWKLPDSIRTRITQSGLEPRLEAIKQKHRKIRTDKLDRQIGTLGGGNHFIEICLDEAD
AVWVMLHSGSRGTGNLIGNYFIERAREQLAHRVLGFHLPDKDLAFFMEDEPLFDDYVEAV
SWAQDYARENREAMMSRVLAEMRHRLPKFQLEKMAVNCHHNYVQKETHGGVDLLVTRKGA
VSARAGELGIIPGSMGAKSFIVRGKGNADSFHSCSHGAGRVLSRTAARQQITLSQHREAT
AHVECRKDAGVIDESPAAYKDIDAVMAAQSDLVEVVHTLRQVVCIKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaacacacaaacacacttcgaactactgcacgccgagggcagcaccaccccgatcaag
ggctgggtgcgcggcgtgcccctggatcagggcgcccacgagcagctgcggaacatcgcg
gcgatccccttcgtcggcccgtgggtcgcggtgatgcccgacgtgcacctgggcaagggc
gcgaccgtgggctcggtcatcccgacgcgcggcgccatcattccggcggcggtcggcgtg
gacatcggctgcggcatggccgcggtgcggaccacgctgcgcgcgaaggacctgccggac
aatctggcgcaactgcgttcgagcatcgagcgcagcgtgccggtcggcaacgggcgcggc
ggggagcactggaagctgccggacagcatccgcacgcgcatcacccagtcgggactggaa
ccacgcctggaggcgatcaagcagaagcaccgcaagatccgtaccgacaagctggatcgc
cagatcggcacactgggcggcggcaaccacttcatcgagatctgcctggacgaggccgat
gcggtatgggtgatgctgcacagcggttcgcgcggaaccggcaacctgatcggcaactac
ttcatcgagcgggcgcgcgaacaactggctcaccgtgtgctgggcttccacctgccggac
aaggacctcgcgttcttcatggaagacgagcccttgttcgacgattacgtggaagcggtc
tcgtgggcacaggactacgcccgcgagaaccgtgaggcgatgatgtcgcgcgtgctggcc
gagatgcgccaccgcctgccgaagttccagctggagaagatggcggtgaactgccaccac
aactacgtgcagaaggaaacgcacggcggcgtggacctgctggtgacccgcaagggcgcg
gtgagcgcgcgcgcaggcgagctggggatcatccccggcagcatgggcgcgaagagcttc
atcgtgcgcggcaagggcaacgcggacagcttccacagctgcagccacggggccggccgc
gtgctgagccgtacggcggcgcgtcagcagatcaccctgtcgcagcaccgcgaggcgacg
gcgcacgtcgaatgccgcaaggacgccggcgtgatcgacgaatcaccggcagcgtacaag
gacatcgacgcggtgatggcggcgcagagcgacctggtggaggtcgtccacacgctgcgc
caggtggtgtgcatcaaggggtga
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