Pseudoxanthomonas mexicana: H4W19_17240
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Entry
H4W19_17240 CDS
T06805
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pmex
Pseudoxanthomonas mexicana
Brite
KEGG Orthology (KO) [BR:
pmex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmex03019
]
H4W19_17240 (hrpA)
Enzymes [BR:
pmex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H4W19_17240 (hrpA)
Messenger RNA biogenesis [BR:
pmex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H4W19_17240 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
WHD_HA2
HA2_C
AAA_22
AAA_19
nSTAND3
AAA_30
AAA_25
AAA_23
SRP54
NACHT
T2SSE
Cas3-like_C_2
nSTAND_NTPase5
PhoH
TsaE
Motif
Other DBs
NCBI-ProteinID:
QND80033
UniProt:
A0ABX6R9T8
LinkDB
All DBs
Position
3707521..3711624
Genome browser
AA seq
1367 aa
AA seq
DB search
MNIPRDPAPAHPDRAALEQGRRALDRALSRDRGRLHGLWSRWQGKPADAGVRQAFEQALN
ASIATRERRLSTVPAVMLDASLPIAREGDRIIELIRNHQVVVIAGETGSGKTTQLPKLCL
AAGRGVAGMIGCTQPRRIAARAVARRVAEELKTELGRGVGFQVRFNDQVGEDTHVKFMTD
GILLAEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLRKRRDLKVIVTSATIDTE
RFAKHFDDAPVISVEGRTYPVEVRYRALEGEGEQAGERTVNEAIVGAVDEITRLDARGDV
LVFLPGEREIRDAHQALERRKYRNTEVLPLYARLSNQDQDRVFNPGPNRRIVLATNVAET
SLTVPRIRYVVDPGFARVKRYSPRNKLDRLHIEPISQASANQRKGRCGRVAEGICYRLYG
EADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEDFPFLEAPDERAIADGWQQLAELG
AIDGERRLTAIGRQMARLPVDVKLARMLVAAQAAGCLRPMLVIASFLGIQDPRERPADAR
GAADTAHAQFADGRSEFVGVLRLWDAYRQAHEDLTQSKLRDWCGRHFLGFLRMREWRELH
RQLRLLCEELGWKEEDADAAMAPLLDGSRAPPVARDDAAAAKATRGQLHRAARLAREGKT
EAAPVAVRAQQDQAPAGGGFSERVRASAYQTLHRALIAGLPTQIGHRTEKGDFQAPRQRR
FLPFPGSPLSKRPPPWLLAANLLDTQKVWGMTLAAIEPDWVIAELPHLLLRRHFDPHWSR
AQGQVLASEQISLFGLVLAPKKPVHYGRIAPGEAHDLFVRQGLVTGEINTRAGFVADNLR
TLAQAREEEAKLRRAGLVADEDWQARWYLDRVPSDLHSAAGLDAWWKTLPADKRRALHWS
LTELLPGEGSEEDRYPKYFPLGDARLPLHYRFEPGAADDGVTLEVPLHLLNALDPARLSW
LAPGFVADKASALIRSLPKAMRRNYVPAPDFARAFFEAFPKPTADDIRGELARFLSKATG
VPVTALDFEEAALEPHLRMNLRLREDPRGGGEGRVLAESRDLDALRARFGAKAGQAFAAR
AGRAMAASGLRDFPQQAIPHEVPGEAGVPAYPALRDEGDTVALQVFADRAEAEAAHPRGV
RRLLEIALADKVKQARKQLPVSPKTGLLYAAIESQERLRGDIVDAAMNAVLADGLEAIRD
RAAFERRRDEAGKRLFGEAMERLKLAEAILSAVADLKPQLEAPLMGWARGNLDDLRAQLA
ALVHPGFLRETPADALAQLPRYVKAMRLRAERAVRDPARDQARMLEIKPFADALAQAVED
GVAGSADWQALRWDLEELRVSMFAQELGARAGVSPKKLAQRLQALRG
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcccccgtgaccctgcccccgcccatcccgaccgcgccgccctcgaacagggc
cggcgcgcgctcgaccgcgcgctgagccgcgaccgcggccgcctgcacgggctgtggtcg
cgctggcagggcaagccggccgatgccggcgtacggcaggcgttcgagcaggcattgaac
gcgtcgatcgccacccgcgagcgccgtctgtcgaccgtgccggcggtgatgctggatgca
tccctgccgatcgcgcgcgagggcgatcgcatcatcgagctgatccgcaatcaccaggtg
gtggtgattgccggcgaaaccggatcgggcaagaccacccagctgcccaagctgtgcctg
gccgccgggcgtggcgtggccggcatgatcggctgcacccagccgcgccggatcgccgcc
cgcgcggtggcgcgacgcgtggccgaggaactgaagaccgagctgggccgtggcgtgggc
ttccaggtgcgcttcaacgaccaggtgggcgaggacacccacgtcaagttcatgaccgac
ggcatcctgctggcggaaatcgccagcgaccgctggctgtcggcctacgacacgatcatc
gtcgacgaagcgcacgagcgcagcctcaacatcgacttcctgctgggttacctgaagcag
ttgctgcgcaagcgccgcgacctgaaggtcatcgtcacctcggccaccatcgataccgaa
cgcttcgcgaagcatttcgacgacgcgccggtgatcagcgtggaaggccgcacctatccg
gtcgaggtgcgctaccgcgcgctggaaggcgagggcgaacaggcaggcgaacgcaccgtc
aacgaggccatcgtcggcgccgtcgacgagatcacccggctggatgcacgcggcgatgtg
ctggtcttcctgcccggcgagcgcgagatccgcgacgcgcaccaggcgctggagcgccgc
aagtaccgcaataccgaggtactgccgctgtacgcgcgcctgtccaaccaggaccaggac
cgcgtgttcaacccggggccgaaccggcgcatcgtgctggccaccaacgtggccgagaca
tcgctgaccgtgccgcgtatccgctacgtggtcgatccgggcttcgcccgcgtcaagcgc
tacagcccgcgcaacaagctcgaccgcctgcatatcgagcccatctcgcaggccagcgcc
aaccagcgcaagggccgctgcgggcgcgtggccgaaggcatctgctaccgcctgtacggc
gaagccgatttccaggcgcgcccggagttcaccgatccggagatccgccgctccagcctg
gccggggtgatcctgcgcatgctgcagctgggcctgggccggatcgaggactttccgttc
ctggaggcgcccgacgagcgcgccatcgccgatggctggcagcagctggccgagctgggc
gcgatcgacggcgagcgccgcctgaccgcgatcggcaggcagatggcacggttgccggtg
gacgtgaaactggcccgcatgctggtggccgcgcaggccgccggctgcctgcggccgatg
ctggtgatcgcctcgttcctgggcatccaggatccacgcgagcgaccggccgacgcgcgc
ggcgccgccgacaccgcgcacgcgcagttcgccgatggccgctccgagttcgtcggcgtg
ctgcgcctgtgggatgcctatcggcaggcccatgaagacctgacccagtcgaagctgcgc
gactggtgcgggcgccatttcctgggcttcctgcgcatgcgcgagtggcgcgaactgcat
cgccagctgcgcctgctgtgcgaggagctgggctggaaggaagaagatgccgatgccgcg
atggcgccgctgctggacggcagccgtgcgccgccggtcgcgcgcgatgatgccgcggcc
gcgaaggccacccgcgggcagttgcatcgtgcggccaggttggcgcgcgaagggaagacc
gaagccgcgccggtagcggtgcgcgcgcagcaggaccaggcacccgccgggggtggtttc
agcgagcgcgtgcgcgccagcgcctaccagaccctgcaccgcgcactgatcgccggcctc
ccgacgcagatcggtcatcgcaccgagaagggcgatttccaggcgccgcggcaacgccgt
ttcttgccgttccccggctcaccgctgtccaagcggccgccgccgtggctgctggcggcc
aacctgctggatacccagaaggtgtggggcatgaccctggcggcgatcgaaccggactgg
gtgatcgccgagctgccgcacctgttgctgcgcaggcacttcgacccgcactggtcgcgc
gcgcagggccaggtgctggcctccgagcagatcagcctgttcgggctggtgctggcgccg
aaaaagccggtccactacggccgcatcgcgccgggcgaggcgcacgacctcttcgtccgg
cagggcctggtcaccggcgaaatcaacacacgcgccggattcgtggccgacaacctgaga
acgctcgctcaggcgcgcgaggaagaggcgaagctgcgtcgggccggcctggtcgccgat
gaggactggcaggcgcgctggtatctggaccgcgtaccgtccgacctccattccgcggcg
ggtctggacgcgtggtggaaaacgctgcctgcagacaagcgtcgcgcgctgcactggtcg
ctgaccgaactgctgcccggcgaaggcagcgaagaagaccgctacccgaaatacttcccg
ctcggcgacgcgcggctgccgctgcactaccggttcgagccaggcgcggccgatgacggc
gtcacgctggaggtgccgctgcacctgctcaatgcgctcgatccggcgcgcttgtcgtgg
ctggcgccgggattcgtcgccgacaaggcctcggccctgatccgcagcctgcccaaggcg
atgcggcgcaactacgtccccgcgccggacttcgcgcgtgcgttcttcgaggcgttcccg
aagccgacggccgacgatatccgcggcgaactggcgcgctttctttcgaaggcgaccggg
gtgccggtgaccgcgctggacttcgaagaagcggcgctggagccacacctgcgcatgaat
ctgcgcctgcgcgaagatcctcgcggcggtggcgagggccgtgtgctggccgagtcgcgc
gacctggacgcattgcgtgcgcgcttcggcgcgaaggccggccaggccttcgccgcacgc
gccggccgcgcgatggcggccagcgggttgcgcgactttccgcagcaggccatcccgcac
gaagtcccgggcgaagccggcgtgccggcctatccggccctgcgcgacgagggcgatacg
gtggctttgcaggtgttcgccgaccgtgccgaggccgaggcggcccacccgcgcggcgtg
cgtcgcctgttggagatcgccctggccgacaaggtgaaacaggcccgcaagcagctgccg
gtctcgcccaagaccggcctgctatatgcggccatcgaatcgcaggagcgcctgcgcggc
gacatcgtggatgcggcgatgaatgcggtgctggcggacgggttggaggcgatccgcgac
cgcgccgcgttcgagcgacggcgcgacgaggcaggcaaacggctgttcggcgaagcgatg
gaaagattgaagctggccgaagccatcctgtccgccgtcgccgacctcaagccgcagctg
gaagcgccgctgatgggctgggcacgcggcaacctcgacgacctgcgcgcgcaacttgca
gcgctggtgcatccgggcttcctgcgcgaaaccccggcggatgcgctggcgcagctgccg
cgctacgtgaaggcgatgcgcctgcgcgccgagcgcgcggtgcgcgaccccgcccgcgac
caggcccgcatgctggagatcaagcccttcgccgatgcgctggcgcaggcggtggaggac
ggcgtggccggatcggcggactggcaggccctgcgctgggacctggaggaactgcgcgtg
tcgatgttcgcccaggagctgggcgcgcgtgcgggcgtgtcgccgaagaagctcgcgcag
cgcctgcaggcgctgcgcggctga
DBGET
integrated database retrieval system
