Prochlorococcus marinus MIT 9303: P9303_04371
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Entry
P9303_04371 CDS
T00466
Symbol
rpoC1
Name
(GenBank) RNA polymerase gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmf
Prochlorococcus marinus MIT 9303
Pathway
pmf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P9303_04371 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmf03021
]
P9303_04371 (rpoC1)
03400 DNA repair and recombination proteins [BR:
pmf03400
]
P9303_04371 (rpoC1)
Enzymes [BR:
pmf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P9303_04371 (rpoC1)
Transcription machinery [BR:
pmf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P9303_04371 (rpoC1)
DNA repair and recombination proteins [BR:
pmf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P9303_04371 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
DUF7337
Pkinase_fungal
Motif
Other DBs
NCBI-ProteinID:
ABM77189
UniProt:
A2C6S9
LinkDB
All DBs
Position
440316..442220
Genome browser
AA seq
634 aa
AA seq
DB search
MTNSNLRTENHFDYVKITLASPDRVMEWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGL
FCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVSHVWY
LKGIPSYVAILLDMPLRDVEQIVYFNCYVVLDPGDHKELKYKQLLTEDEWLEIEDEIYAE
DSTIENEPIVGIGAEALKQLLEDLNLAEVAEQLREDISSSKGQKRAKLIKRLRVIDNFIA
TNARPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE
IIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDY
SGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIVNNIKAAKKLIQRADDEVM
QVLQEVIEGHPILLNRAPTLHRLGIQAFEPKLVAGRAIQLHPLVCPAFNADFDGDQMAVH
VPLAIEAQTEARMLMLASNNILSPATGDPIITPSQDMVLGSYYLTAIKPGASVPEFGDQS
RTYAGLEDVIHAFEDKRLLLHDWVWVRFNGEVEDEDEIDKPLKAESLSDGTRIEQWTYRR
DRFDEDGALISRYILTTVGRVVMNYTIIDAVAAA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgactaacagcaacctccgtacagagaaccacttcgattacgtcaagatcacacttgct
tcaccagaccgggtgatggagtggggtcagcggacacttcctaatgggcaggtagtgggt
gaagtgacgaagccggagacgatcaattaccgcacccttaagcctgagatggacgggctc
ttttgcgagaagatcttcggcccttcaaaggattgggagtgtcattgcgggaaatataag
cgtgttcgacaccgtggcattgtctgtgagcgctgtggcgtggaggtcactgaaagtcgg
gtccggcgtcatcgcatgggcttcatcaagttggctgctcctgtctcccacgtttggtat
ttgaaagggatacctagttatgtggcgatcttgttagatatgcctctacgcgatgttgaa
cagattgtttacttcaactgttatgtcgtgctcgatcctggcgatcataaggaactcaag
tataagcagttactgactgaggatgagtggctagagatcgaagatgagatctatgcggaa
gattccacgattgagaatgagccgatagttggcatcggggctgaagccctaaagcaattg
ctagaagatttgaatttggctgaggttgctgaacagttgagagaggatatttcctctagc
aagggtcagaaacgggccaagttgattaagcgtttgagagtgattgataactttattgcc
actaacgcaaggcctgagtggatggtgctggatgcaattccagttattcctccagatttg
cgccccatggtgcaattagatggtggacgtttcgctacatccgatctaaatgatctctac
cgtcgggtgattaaccgcaacaaccgtcttgcgcggcttcaggaaatcttggctcctgag
attatcgttcgcaatgagaagcggatgctccaagaggcagttgatgctctgatcgataat
ggtcgtcgtggtcgaactgttgttggtgctaataatcgcccgttgaagtcacttagtgac
atcattgagggcaaacagggtcgcttccgccagaacttgttaggtaagcgggtcgactat
tctggtcgttccgtgatcgtggtgggccccaagctgaagatgcatcagtgcggcttgcct
aaagagatggcaatcgagctattccagccttttgtgatccatcgcctgattcgtcaaaac
attgtcaacaacatcaaagccgctaagaagttgatccagcgagctgatgatgaggtcatg
caggtgctgcaggaggtcattgaggggcacccgatccttttaaaccgcgctccaactctg
caccgtctgggtatacaggcttttgaaccgaagctggttgctggccgtgccattcagctt
cacccgttggtttgccctgcctttaacgccgactttgatggcgaccaaatggctgttcat
gtgcctttggcgattgaggctcagacggaagcgcgaatgttgatgttggccagcaacaac
atcctttcacctgccactggcgatccgatcatcacgccttcccaggacatggtgcttggc
tcctattacctaacggcgattaagcctggagcttctgttcctgagtttggcgatcaatcc
agaacctatgctggtttagaggacgtcatccatgcgtttgaagataaaagactcctactg
catgactgggtttgggttcgcttcaacggtgaggtagaggatgaagatgaaattgacaaa
cctctcaaggctgaatcacttagtgatggcactcgcattgagcagtggacttatcgccga
gatcgtttcgacgaagacggagcattgatcagtcgctacatccttacaacagtgggacgc
gtggtgatgaattacacaattatcgatgcggtggccgccgcctga
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