Prochlorococcus marinus MIT 9303: P9303_14371
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Entry
P9303_14371 CDS
T00466
Symbol
mfd
Name
(GenBank) Transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmf
Prochlorococcus marinus MIT 9303
Pathway
pmf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P9303_14371 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmf03400
]
P9303_14371 (mfd)
Enzymes [BR:
pmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P9303_14371 (mfd)
DNA repair and recombination proteins [BR:
pmf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P9303_14371 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABM78183
UniProt:
A2C9M3
LinkDB
All DBs
Position
complement(1231596..1235177)
Genome browser
AA seq
1193 aa
AA seq
DB search
MPLSSLVRQLQMSTLTGELVDRSNRSDRLLMRGAGRVGRALIASAIARHQSRPLVVIVPT
LEEANRWSSLLALMGWSHNHLYPTSEGSPYEPFDPTTEIVWGQLQVLSELLGESTRRWDR
AIVATERALQPHLPPVEALASQCEILSRGENIDLESLASTLTKLGYDRVTAVDQEATWSR
RGDIVDIFPVSSELPVRLELFGDELDKLREFDPVTQRSLDEVNELCLTPSGFSPLIAHQL
RQSMPDGLDRLVSEETLDQLFEGSTPDGIRRLMGIAWNKPASLLDYIPANSFIAIDEKRH
GSAHGKLWLQHAEEHHNDVGQSMGLSIDEQKKYWPPLLHRSIGESYANTDGFAGIDLAEL
HEDDGYANSFDLASRPIPANPNQFGRLGEQIKNYQKAHHPVWLLSAQPSRAVALLEEHDC
ITRFVPNAKDHPAIERLLEQNTPVALKTSGSVDLEGLILPAWRVVLMTDHEFFGQKNLGS
TGYVRRRRRAASRTVDPNKMCSGDFVVHRNHGIGRFLKLEKLAISGEVRDYLVIQYLDGT
LSVAADQLGSLGRYRSTSESPPKLNRMGGTAWQKIKERTRKLVRKVAMDLVKLYAERLQA
PGYAFPPDGPWQIELEESFPYEPTPDQVKAVVDVKRDMEAAQPMDRLVCGDVGFGKTEVA
IRAIFKAITSGRQIAMLAPTTVLAQQHWRTLSDRFAPYPIKVALLNRFRTSSERKSILNG
LKEGTIDAVVGTHQLLSKNTTFQKLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATP
IPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAAFDEEAVRSSIRQELDRGGQVFYVVPR
VEGIEDVASQLQQMLPDLKLLVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIP
RVNTILIEDAHKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSDAARQRLRAIQEFAQ
LGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQGIPSVDDTQ
IDLPVTAFVPAEWIVDGDEKIAAYRAAANCASHESLIELAASWTDRYGAIPGPVQSLLQL
MELKLLARRCGISRIKPEKPNIAMETPMEEPAFRLLRQGLPQHLHGRLIYQTGSGNKAKV
LARGLSVLPMEKQLEQLMEWLRLMATQIPCEDGLTASQQKQQAVERDEAVITP
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgagctcattagttcgtcagcttcagatgtcgactctcactggtgagttggtg
gacagaagtaatcgaagcgatcgcttgctgatgcgtggagccgggcgagtggggcgtgca
ttaattgcaagtgcaatagctcgtcatcagagccgtccactggttgtgatcgtgccaaca
ctagaagaggcgaatcgctggtcttcgctgcttgccttgatgggttggtcgcataatcat
ctctacccaacaagtgaaggatcaccttatgagccatttgacccaacaacagaaatcgtc
tggggccaattgcaggttctaagtgaactacttggtgaatcaacaagaaggtgggatcga
gccatagtggccacagaaagagctttacaaccacatctacctcctgttgaggcactcgca
tcacagtgtgaaatcctcagtcgtggagagaatattgacctggagagcttagccagtact
cttaccaagcttggatacgatcgagttacagctgttgatcaggaagctacctggagtcgt
cgtggtgacattgttgatatatttccagtaagcagtgaattgccagttcgcctcgagtta
ttcggcgatgaacttgacaaattaagagaattcgacccagtcactcaacgttccctggat
gaagttaatgaactttgcctaactccttcagggtttagtccattaattgctcatcaacta
cgacagtccatgcccgatgggcttgaccgtcttgttagtgaggagactttagatcaacta
ttcgaaggttctacacctgatggtataagaaggttaatgggaattgcatggaacaaacct
gcctcgctacttgactacattcctgccaactcctttatcgcaatagatgagaagcgtcat
ggctctgcacatggaaagctatggcttcaacatgcagaagaacatcacaatgatgtcggt
caatcaatgggcttgtccattgatgaacaaaagaagtattggcctccattgcttcatcgc
agcatcggagaaagctatgcaaacacagatggctttgccggtattgatcttgctgaactc
catgaagatgatggttatgcaaatagttttgatcttgccagtcgcccaattccggccaac
ccaaaccaattcggaaggttaggagagcaaatcaaaaattatcaaaaagcacatcatccc
gtttggcttttgtcagcgcaaccaagccgtgctgtggctcttcttgaggaacatgactgc
atcacacgcttcgtcccaaacgctaaagatcacccagccattgaacgtttgctcgagcaa
aacacgccagtagcattaaaaacaagtggttctgtggatttagaggggctgatcttgcca
gcctggcgagttgttttgatgactgaccatgaattttttggtcaaaaaaaccttggctct
accggttatgttcgacgacgacgacgggccgcgagtcgtacggttgaccccaacaaaatg
tgctctggggacttcgtcgtacatcgcaatcacggcatcggtcgttttctgaaattagaa
aaactggccatcagtggtgaggtccgtgactatttggttatccaatatttggatggaaca
ctcagcgtggccgccgatcagctcggcagccttggtcgctatcgatcaacaagtgaatcg
ccaccaaaactcaatcgcatgggaggaacagcgtggcaaaaaattaaagagcgaacccga
aagttagttcgcaaagttgcgatggatctggtcaagctctatgcagagcgactccaggcc
cctggatatgccttcccaccagatggaccttggcagattgaactagaagaatcatttccc
tatgaaccaacacctgatcaagtcaaggcagtcgttgatgtaaaacgcgatatggaagca
gcacaacctatggatcggcttgtgtgcggagatgttggtttcggaaaaacggaagtagca
atacgagccatcttcaaagcaatcacgtctggacgccagatagccatgcttgcccccaca
acagtgctagcccaacaacactggagaacactttcggaccgcttcgctccctacccaatc
aaggtcgctttactgaacagattcagaacaagctcagaacgaaaatcaatacttaatggc
ctcaaagaagggacaatcgatgcagttgtcggtacccaccagctactcagtaaaaacaca
acattccaaaaactagggttgttggttgttgatgaggaacagcgttttggagtcaatcaa
aaggaaaagatcaaagttcttcgtaaggatgtagatgttttgaccctttcagctacacca
attccgcggaccttatacatgagcctttcaggggtaagggaaatgagtctgatcacaacc
cctccgccattgcgccgtcctatcaaaacccacctagctgcttttgatgaagaagcagtt
cgtagttctatccgccaggaacttgatcgaggcggacaggtgttctatgtcgttccacgt
gttgagggtattgaagatgtagccagtcaacttcaacagatgctgcccgatttgaagttg
ttggtagcccatggtcagatggcagaaggcgaacttgagagctcgatggtcgcctttaat
gcaggggaggccgacttgatgctatgcaccacgatcgttgaaagtggcctcgatatccca
cgtgtgaacactatcctcattgaggatgctcataaatttggactagcacagctctaccaa
ctacgtggacgtgtgggtagaagcggtgttcaagcgcatgcatggttgttctatccgggt
gacgcatccctgagtgatgccgctagacaacgcctaagagcaatccaagaatttgcacag
ctaggcagtggctatcaactagccatgcgagacatggaaatccgtggtgtgggaaacctt
ctcggggttgaacaaagcggacaaatggaaaccattggtttcgatctttacatggaaatg
ttgcaggaatcacttgctgaaatccaaggacagggcattccatctgtagatgacactcaa
atcgatctaccggtaacagcattcgtgccagcggaatggattgttgatggtgacgaaaag
atcgctgcttaccgagctgcagcaaattgtgcttctcatgaatcactgattgagttggca
gctagctggacagaccgctacggagccattcctggtcctgtgcaatcacttcttcaactc
atggagctcaaactcttagctcgtcgctgcgggatctcgagaattaaaccagaaaagcca
aatattgcgatggaaactccgatggaggagcccgccttccggctacttaggcaaggttta
ccgcaacacctgcacggccgactgatttaccagactggaagtggaaataaagccaaggtg
ctggcaagaggtctaagcgtcttgcctatggaaaaacagctagaacaactgatggagtgg
ttgcgtctcatggccactcagattccttgcgaggatggattaactgcaagtcagcaaaag
cagcaagccgtagagcgagatgaggccgtcattactccctaa
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integrated database retrieval system
