Prochlorococcus marinus MIT 9303: P9303_23721
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Entry
P9303_23721 CDS
T00466
Symbol
rne
Name
(GenBank) S1 RNA binding domain:Ribonuclease E and G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmf
Prochlorococcus marinus MIT 9303
Pathway
pmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P9303_23721 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmf03019
]
P9303_23721 (rne)
03009 Ribosome biogenesis [BR:
pmf03009
]
P9303_23721 (rne)
Enzymes [BR:
pmf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
P9303_23721 (rne)
Messenger RNA biogenesis [BR:
pmf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P9303_23721 (rne)
Ribosome biogenesis [BR:
pmf03009
]
Prokaryotic type
rRNA processing factors
P9303_23721 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ABM79105
UniProt:
A2CC95
LinkDB
All DBs
Position
complement(2089136..2091079)
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AA seq
647 aa
AA seq
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MPQQIVISEQLRIAALLTDERVDELIVAQGRYQIGDVYLGTVENVLPGIDAAFVNIGESE
KNGFIHVTDLGPLRLKKGAAGITELLEPRQQVLVQVMKEPTGSKGPRLTGNLALPGRYLV
LQPHGQGVNISRRINSEGERNRLRALGVLVKPPGAGLLVRTEADGISEDLLIDDLEVLLR
QWEAIQQAADNALPPVLLNRDEDFIHRVLRDHVGPDLVRVVVNDAAAIERVSSFLGQEGP
NVLVEAHNESTELLEHYRVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRS
ANARQTVLWTNCEAAIEIARQLKLRNIGGVIIIDFIDMESRRDQLQLLEHFTAAVRDDAA
RPQIAQLTELGLVELTRKRQGQNIYELFGRACPACGGLGHVAVLPGKDLLQPLAMATGLV
RSAAAARAEAQVPADGGNGRRRRGGRIRTGAVELPAHTPPSDVANGVESTTSVEPERQEP
SASSEGVIRRQEPELVAVPMDSGQEEVFAWLGLNPLLLIEPPPENDNLLVRVVRPGEDAE
SVLEEAREQLSASSNRRRRRGRGGGRGAGRGAPEASVETPSSNGTEVVVQQAKVVAKNEP
LSVQITPLEVDHSSSSASVETVSSISEQQESEPEDPRRRRRRSSAAG
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgccccagcaaattgtcatctctgagcagctgcgcatcgcagctttgctcacagatgag
cgagtcgatgagttgatcgtcgctcagggtcgataccagatcggagatgtctacctcggc
acagtcgagaacgttctcccgggaattgatgcagcttttgtgaatattggggaaagtgag
aaaaatggttttatccatgtcactgatctgggccctctgcgtttgaagaagggtgctgca
gggattaccgagctgctggagccccgtcagcaggtgttggtacaggtgatgaaggagcca
acagggtctaaggggccaaggcttactggcaacctggcgctgcctggtcgctacttggtg
ctgcagccccatggccagggggtgaacatctctcgccggattaattccgaaggggaacgc
aatcgcttgcgagcacttggcgtactagtgaagccgcctggtgctggcctgttggttcgc
accgaagccgatggcattagtgaagatctgctgatcgatgatctggaggttttactcagg
caatgggaagcgatccagcaggcggcagacaatgctctaccaccggtactgctcaatcgc
gatgaagatttcattcatcgcgttttaagagatcacgtcggtccagatcttgtgagagta
gtggtcaatgatgccgctgccattgagcgtgtgagcagtttccttggccaggaagggcca
aatgtattagttgaggcccataacgaatccaccgaacttcttgagcattaccgagttaat
gcggccatccgagatgctctcaagcccagggtagatctgccatccggtggctacgtgatc
attgagccgacggaggcactcactgttattgatgtcaattcaggctcgttcactcgttcg
gccaatgctcgtcagacggtgctctggaccaattgtgaggcagctattgagattgcccgc
cagctgaagcttcgcaatattggcggtgtgatcatcatcgacttcatcgacatggagtcg
cgccgtgatcagttgcagttgctggagcatttcacagcagccgttcgcgatgacgctgct
cgtcctcagattgcccagttgactgaactggggctggtggaactcactcgtaagcgtcag
gggcagaacatctatgaattgtttggcagggcttgtcctgcctgtggtggccttggccat
gtagcggtactacctggcaaagatctgctacagccacttgctatggcgactggattggtg
agatcagcagccgctgctcgagctgaagcgcaggtgccagcggatggcgggaatggtcgc
cgtaggcgtggtgggcgcattcgtaccggtgctgttgagctgcctgcacatacgcctcct
tctgatgtggcgaatggagttgagtcaaccacgtctgttgaacctgagagacaagagcct
tcggcctcgtctgagggtgttattcgtcgccaggaacctgaattggttgctgttccaatg
gattcagggcaggaggaggtgtttgcttggcttggattaaaccctttgcttttgattgag
ccacctccagagaatgacaaccttctggttcgcgtggttcggcctggggaagatgctgag
tctgtccttgaggaggctcgtgagcagctttcagctagttccaatcggcgtcggcgtcgg
ggacgaggtggtggtcgaggggccggccgtggtgctcccgaagccagtgtcgaaacccct
tcatccaatggcacagaggtcgttgtccagcaagccaaggttgtcgcaaagaatgagccc
ctaagtgttcaaatcactcctcttgaggttgatcattcatcgagtagcgcttctgtagaa
accgtttcttcaatttctgagcagcaggagagtgaacccgaggatccgcgccgccgccgc
cgccgctcctctgccgcaggctga
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