Prochlorococcus marinus MIT 9301: P9301_10301
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Entry
P9301_10301 CDS
T00488
Symbol
mfd
Name
(GenBank) Transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmg
Prochlorococcus marinus MIT 9301
Pathway
pmg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P9301_10301 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmg03400
]
P9301_10301 (mfd)
Enzymes [BR:
pmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P9301_10301 (mfd)
DNA repair and recombination proteins [BR:
pmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P9301_10301 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
ResIII
CarD_TRCF_RID
UB2H
Cas3-like_C_2
MauJ
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABO17653
UniProt:
A3PD28
LinkDB
All DBs
Position
888711..892220
Genome browser
AA seq
1169 aa
AA seq
DB search
MSLNTLVDYISNSQITSELIKRISKNNELNIIGSSRYAKSIILNSIAKTEGKNILLICPN
EEIAYKWIGYFESINNKAVLYYPPTEHLPYSSINKSKEIEFSQLTVLSKLIEKEKNELNI
VISTERSLQPHLVNKNLLIENKLNLQKGVQIEIKELANKLTLLGYTKENVTSSEGFWSRR
GEIIDIYPVNNEFPVRLEFFDNVIEKIREYDPHTQKTLESINNIEIIQAGFDLLIKDKLN
NLSKNSIFNSEDINKNNLDRYLGIIEEEPRNIIDFINKETILVIDELEDCKKFANNWYLD
SESNFDNCVYELNENLKNNDINLEAKPNLHLKFEEILNSLRNFNLIKFYEFESKVNIDNR
FLLNDKRLNSYSKNIGKLSNDINKNIKNNEKVWILSAQPLRTRTLLFEHECNTNFLNNPN
DIDEAFKSINNSTPLILKNKNNYEIEGFSLPIWKVVLITDKELFSQQSLFNNVFIRRKKR
SVNSNINVNKISPGDFIVHKNHGIGKFLKIEKINLTGDSRDYLVIQYQDGKISVAADQLG
SVNRYRSSGKIKPKINKLGGTEWERIKDKNKKQIKKVAVDILKLYAKREKLKGHIYPEDG
PWQDELEESFPYQPTPDQITAVKEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAIT
SGKQVIFLAPTTILAQQHWRTINNRFSPYPIKVSLLNRFKSINERREIYAGLKNNKIDLV
VATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYMSL
SGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINKELDRGGQIFYVLPRISDIDQAID
KLKNMIPNLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIED
SHKFGLSQLYQLRGRVGRSGVQAHAWLFYPNINKINDAAKQRLKAIKDFSELGSGYQLAM
KDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEVNDTQIDLPINAFI
PATWILNREEKLEAYKSATECSNNYELTELATDWVNRYGNLPKPVESLIMIMRLKLLAKK
CGFNKIKLKKPNILIETKLKNSTFKILKNSLASSVQNKFNFNEGEQLSIITIRGLGATEI
QNQIDQLMLWFGSFEKEINNFDKELIKRE
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaaatactttagttgattatatttctaactcacaaattacttctgaattaata
aaaagaatttcaaaaaataatgaattaaatattattggttcaagtagatatgctaaatca
ataattttaaatagcatcgcaaaaacagaagggaaaaatatattattaatttgtcctaat
gaagaaattgcctacaaatggattggttattttgaaagtataaataataaagcagtttta
tattatcctccaacagaacatctaccatactcatcaattaataaatccaaagagattgaa
tttagtcagcttactgttttatctaaattaatagaaaaagagaaaaatgaacttaatatt
gttatatcaacagaaagatcactacaacctcatctagtaaataaaaacttattaattgaa
aacaagttaaatttgcaaaaaggggttcaaatcgagattaaagaattagcaaataaactt
actttgctgggttatacaaaggaaaatgtgacatcatcagaaggattttggagtagaaga
ggggaaataatagatatttatcctgtaaataatgagtttcctgtaagattagaatttttt
gataatgtaattgagaaaataagagaatatgatccccacacacaaaaaacattagaaagt
atcaataatattgaaataatacaagctggatttgatttgttaataaaagataagttaaat
aatttatctaagaacagtatttttaattcagaagatataaataaaaataatcttgatcgt
tatttgggaataattgaagaagaacctagaaatataatagattttataaataaagaaaca
attctagtaattgatgaattagaagattgtaaaaaatttgcaaataattggtatctagat
tcagaaagtaattttgataattgtgtgtacgaattaaatgagaaccttaaaaataatgac
ataaatttagaagccaaacctaatttgcatttaaagtttgaagaaatattaaattcactg
agaaattttaatttaataaagttttatgaatttgaatctaaagtcaatattgataatagg
tttttgttaaatgataaaagattaaattcatactctaaaaatataggaaaattatccaat
gatataaataaaaatataaaaaataatgaaaaagtatggatattatcagcacagccattg
agaacaaggactttactttttgagcacgaatgtaatacaaacttcttaaacaatcctaat
gatattgatgaagcatttaagtcaattaataattcaactcctttaattttaaaaaataag
aacaattatgaaatcgagggtttttctcttccgatatggaaagttgtcctgataacagat
aaagaattattttcacaacaatctctttttaataatgtattcataagaagaaaaaaaaga
agtgtcaattcaaatataaatgtcaataagattagtcccggtgattttatagtccataaa
aatcatgggataggaaaatttttaaaaattgaaaaaataaatttaactggagattcaaga
gattatttagtcattcaatatcaagatgggaagataagtgttgccgctgatcaactcggt
agtgttaacagatatagatcaagcggaaaaataaagccaaaaataaataaattagggggg
acagaatgggaaagaataaaagataaaaataagaaacaaatcaagaaggttgctgtcgat
atattaaaactttatgcaaagagagaaaaattaaaggggcacatatatccagaggatggt
ccttggcaagatgaattagaggaatcattcccttatcaaccaaccccagatcaaattact
gctgttaaggaaataaaatctgatatggaaagcgataagccaatggacaggttagtttgt
ggagatgttggatttggtaaaacagaagtcgctgttcgggctatttttaaggctataaca
tcaggcaaacaggtaatatttctagctcctacaacaatcctagctcaacaacattggaga
accataaataatagattttcaccttacccaattaaagtatcattactcaatagattcaaa
tccattaatgaaagaagggaaatctatgcaggtttgaaaaataacaaaattgatttagtt
gtagcaacacaccaaattttaggaaaagaaatagaaattaaaaatttaggattacttgtt
attgatgaagaacaaagatttggagtaaggcaaaaggagaaaataaaaaaaatcaaaacc
aacatagacgttttaactctctcagcaactccaattccaagaactctttatatgagctta
tctggactaagacaaatgagcttactaaatactcctcctccatcaagaagatcaataaaa
acatatttatctgaaatagatatggatgttataagaactgcaattaataaagaacttgat
aggggaggtcaaattttttatgttcttccaagaatttctgatattgatcaagctatagac
aaattaaaaaatatgattcccaacttaaaatttattgttgctcatgggcaaatgaacgaa
acagagcttgaaaatgcaatgattgcttttaataatggagaagttgatctaatgatatgt
acaacgataattgaaagtggattagacatccctaaagtaaatacaatcattattgaagat
tctcacaaatttggcctttcacaactttatcaacttagaggaagagttggaagaagcggt
gtacaagcacatgcttggttattctatccaaatataaataaaattaatgacgctgcaaaa
caaagattgaaagcgataaaagacttttcagaactaggaagtggataccaacttgctatg
aaagatatggagataagaggtgttggaagtttactaggagaagaacaaagtggaaaggtt
aatgcgattggatatgatttatatatagagatgctccatgaggctatttcagaaatcagt
gggcaagaaatacctgaagttaacgacacgcaaattgatctacctataaatgcatttata
ccagcaacatggatattaaacagggaagagaagcttgaggcttacaaatctgctactgaa
tgttcaaataattatgaattaactgaattagctacagactgggtgaatagatatggaaac
ttacccaaacctgttgagtccctgattatgataatgagactaaagttactagctaaaaaa
tgtggttttaataagatcaagctcaaaaagccaaacatcctgatagagacaaaattaaaa
aattctacttttaaaattcttaaaaattctttagcaagtagtgttcaaaataaatttaat
tttaatgaaggcgaacaattatcaatcataactataagaggtttaggtgcaactgaaatt
caaaatcaaattgatcaactaatgttgtggttcgggtcttttgaaaaagaaataaataat
ttcgataaagaacttattaaaagagaataa
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