Prochlorococcus marinus MIT 9301: P9301_12081
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Entry
P9301_12081 CDS
T00488
Symbol
srmB
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmg
Prochlorococcus marinus MIT 9301
Pathway
pmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P9301_12081 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmg03019
]
P9301_12081 (srmB)
03009 Ribosome biogenesis [BR:
pmg03009
]
P9301_12081 (srmB)
Enzymes [BR:
pmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P9301_12081 (srmB)
Messenger RNA biogenesis [BR:
pmg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P9301_12081 (srmB)
Ribosome biogenesis [BR:
pmg03009
]
Prokaryotic type
rRNA helicases
P9301_12081 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Cas3-like_C_2
P-loop_SecA
AAA_30
SWI2_SNF2
UvrD-helicase
Flavi_DEAD
MJ1010-like_2nd
Motif
Other DBs
NCBI-ProteinID:
ABO17831
UniProt:
A3PDK6
LinkDB
All DBs
Position
complement(1021486..1023267)
Genome browser
AA seq
593 aa
AA seq
DB search
MAFKKDSNSLGSEQENSQNDDSSLLEFKNLDNKKEIESQLLEVSKGEDNDNGFLEFGFNQ
SILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLTDNKELN
AKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKVDVVVGTPG
RIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSATMPNEI
RNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNNEGVIIFVRTK
LLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAARGLDVERIK
LVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNLREKHFLRNLENSTRTKIEEINIPS
NKIINEKRMEKLIDSFNESSLAKDENEENKALIIDVLDNLKEKYSMDDSNIAMAAINLVI
GNKSFFVNDDDSWINKQNNTDRNRSNRNNNNRMRNSSRRNNYQNDSFETYKFNFGKFDGV
RVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRDLHRETKNKLKKIKVRN
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaaaaaagatagtaactctcttggtagtgagcaggaaaactctcagaatgac
gattcttctctactagagttcaagaacttagataacaaaaaagaaattgaatctcaacta
ttggaagtatctaagggagaagataatgacaatggatttctcgaatttgggtttaatcaa
tcgatcttaaactcgttaataaataaaggatataaaaatccaactcccatccaaaaagct
gcaattcccgaactaatgttaggcagggatttattaggccaagcacaaacaggaacagga
aagactgcagctttcgcattaccattaatagaaaaacttacagataataaagaattaaat
gccaaggttttagttatgactcctacaagagaattagcaactcaagtggcagaatccttt
aaaagttatagttctgaatctagtaattttaagacggttgcaatatatggaggtaccgac
tatcgaaatcaaatttctgcattaaaaagaaaagttgacgtagtagttgggaccccaggc
cgaataatggatcatataaggcagggtacttttaaaattaaagatataaattgtcttgtt
ttagatgaggcagatgaaatgttaaatatgggttttcttgaagatattgaatggataata
gatcaacttccggaaaataagcagatggtattgttttcagcaacaatgcctaatgagata
agaaatatagcaaaaaaatatctaaatgatcccgccgaaatattaatcaaaagtgtcaaa
aaagaaactcaattaatttctcaaaaatttctatatgttcaaagacatcataagttagat
gctttaaaaagaatactagaacttaataacgagggagtaattatttttgttaggacaaaa
ctacttactacttcaatcgctgaagctttagagaattcaggtcatactgtggcagtactt
aatggagatatacctcaaaatcaaagagaaaatactgtagatagattgaaaaaaggattt
attaatattcttgttgcaactgatgtcgcagctaggggattagatgttgagaggataaaa
cttgttgttaattacgattttccttttgacaaggaaacatatactcatagaattggaaga
actggaagggcaggcagatcaggagaagcaattttattcgttaatctaagagaaaaacat
tttctaagaaacttagaaaattcaacaagaaccaagattgaagaaattaatataccaagt
aataaaataataaatgaaaaaaggatggagaaacttatagatagttttaatgagagttct
ttagctaaagatgaaaatgaagaaaataaagctttgattattgatgtactagataattta
aaagaaaaatactctatggatgactcaaatattgcaatggcggctattaatttagtaata
ggtaataaatcattttttgttaatgacgatgattcttggattaataaacaaaataatact
gatcgaaatagatcaaatagaaataataataaccgtatgagaaattcaagtagaagaaat
aattatcaaaatgattcttttgaaacctacaaatttaactttggtaaatttgatggagtt
agagttgcaaatattatatcctcaatctgtaattcaactaatataaatggtagatccata
ggtaagatacagatttttaatgattacagtttggtagatttaccaagagatctgcataga
gaaactaaaaataaattaaaaaaaattaaagtaagaaactag
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